Locus 6433

Sequence ID X_DroMel_CAF1
Location 16,128,168 – 16,128,269
Length 101
Max. P 0.961743
window10502

overview

Window 2

Location 16,128,168 – 16,128,269
Length 101
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 75.77
Mean single sequence MFE -29.33
Consensus MFE -21.50
Energy contribution -20.53
Covariance contribution -0.97
Combinations/Pair 1.35
Mean z-score -1.72
Structure conservation index 0.73
SVM decision value 1.53
SVM RNA-class probability 0.961743
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16128168 101 + 22224390
GGCAAGUCAUCCUCGGAUUUACCCAGAUGGUGCAGAGGAUGCGCGAAUCGCUUGCCAUCGGCGGUCAAAAAGUUGACGUUCUCUGCAA-AAUUUCG-AAAAUA
((.(((((.......))))).)).((((..(((((((((((.((((.....))))))))....(((((....)))))...))))))).-.))))..-...... ( -29.00)
>DroPse_CAF1 1952 96 + 1
GGCAGGUCGUCCUCCGACUUUCCCAAAUGAUGCAGCGGAUGGGCAAAUCUUUUGCCAUCUGCCGUCAGGAAGUUGACAUUCUCUGCAA--A----G-ACCAUA
.((((((((.....))))(((((....(((((..((((((((.(((.....)))))))))))))))))))))..........))))..--.----.-...... ( -30.60)
>DroWil_CAF1 1063 101 + 1
GGUAAAUCAUCUUCAGAUUUUCCUAAAUGGUGUAGGGGAUGGGCAAAUCGUUUACCAUCUGCAGUAAGGAAAUUAACGUUCUCUGCAA-AUAUAUA-AAGAUC
((.(((((.......))))).)).......(((((((((((......((.(((((........)))))))......))))))))))).-.......-...... ( -20.50)
>DroMoj_CAF1 1891 102 + 1
GGUAGAUCAUCUUCGGAUUUGCCCAAGUGGUGUAGCGGAUGCGCAAACCGUUUGCCGUCCGCAGUUAGGAAAUUGACAUUCUCUGCA-UGGAAUAAACAAAUA
((((((((.......))))))))....(.((((((((((((.((((.....))))))))))).(((((....)))))......))))-).)............ ( -31.30)
>DroAna_CAF1 5714 97 + 1
GGUAAGUCAUCCUCUGAUUUCCCCAAAUGGUGUAGAGGAUGGGCAAAUCUUUUGCCAUCGGCAGUCAAAAAGUUGACGUUCUCUGCAG-CAUUG-----AAUU
((.((((((.....)))))).))..((((.((((((((((((((((.....))))).(((((.........)))))))))))))))).-)))).-----.... ( -34.00)
>DroPer_CAF1 1966 97 + 1
GGCAGGUCGUCCUCCGACUUUCCCAAAUGAUGCAGCGGAUGGGCAAAUCUUUUGCCAUCUGCCGUCAGGAAGUUGACAUUCUCUGCAA-AA----G-ACCAUA
.((((((((.....))))(((((....(((((..((((((((.(((.....)))))))))))))))))))))..........))))..-..----.-...... ( -30.60)
>consensus
GGCAAGUCAUCCUCCGAUUUUCCCAAAUGGUGCAGCGGAUGGGCAAAUCGUUUGCCAUCUGCAGUCAGGAAGUUGACAUUCUCUGCAA_AA_U__G_AAAAUA
((.(((((.......))))).)).......(((((.(((((.((((.....)))))))))...(((((....))))).....)))))................ (-21.50 = -20.53 +  -0.97)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:36 2006