Locus 6432

Sequence ID X_DroMel_CAF1
Location 16,125,497 – 16,125,588
Length 91
Max. P 0.924571
window10501

overview

Window 1

Location 16,125,497 – 16,125,588
Length 91
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 92.22
Mean single sequence MFE -26.99
Consensus MFE -21.29
Energy contribution -22.13
Covariance contribution 0.84
Combinations/Pair 1.04
Mean z-score -2.06
Structure conservation index 0.79
SVM decision value 1.16
SVM RNA-class probability 0.924571
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16125497 91 - 22224390
CAUGGGGACACUUUGAACGGGUUUCGGUCGGCUUUUGAGCUAUCAAAGCCAGACU----GACUGGUACACAAGAACACAAACAGGUGACCCCAAA
..(((((...(((((.((.((..((((((((((((.((....)))))))).))))----)))).)).)).)))..(((......))).))))).. ( -32.10)
>DroSec_CAF1 4927 91 - 1
CAUGGGGACACUUUGAACGGGUUUCGGUCGGCUUUUGAGCUUUCAAAGCCAGACU----GACUGGUACACAAGAACACAAACAGGUGACCCCAAA
..(((((...(((((.((.((..((((((((((((.(......))))))).))))----)))).)).)).)))..(((......))).))))).. ( -30.90)
>DroSim_CAF1 5428 91 - 1
CAUGGGAACACUUUGAACGGGUUGCGGUCGGCUUUUGAGCUUUCAAAGCCAGACU----GACUGGUACACAAGAACACAAACAGGUGACCCCAAA
..((((....(((((.((.(((..(((((((((((.(......))))))).))))----)))).)).)).)))..(((......)))..)))).. ( -27.20)
>DroEre_CAF1 4791 91 - 1
CAUGGGAACACUUUAAACGGGUCUCGGUCGGCUUUUGAGCUUCCAAAGCCAUACU----GACUGGUACACGAAAACACAAACAGGUGACCCCAAA
..((((...........((.((..(((((((....((.(((.....)))))..))----)))))..)).))....(((......)))..)))).. ( -24.10)
>DroYak_CAF1 4845 95 - 1
CAUGAUAACACUUUGAACAGGUUUCGGUCGGCUUUUGAGCUUUCAAAGCCAGACUGACUGACUGGCACACAAAAACACAAACAGGUGACCCCAAA
........(((......(((...((((((((((((.(......))))))).))))))))).(((.................))))))........ ( -20.63)
>consensus
CAUGGGAACACUUUGAACGGGUUUCGGUCGGCUUUUGAGCUUUCAAAGCCAGACU____GACUGGUACACAAGAACACAAACAGGUGACCCCAAA
..((((..(((((((.((.((((..((((((((((.(......))))))).))))....)))).)).)).............)))))..)))).. (-21.29 = -22.13 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:35 2006