Locus 6431

Sequence ID X_DroMel_CAF1
Location 16,125,322 – 16,125,413
Length 91
Max. P 0.598950
window10500

overview

Window 0

Location 16,125,322 – 16,125,413
Length 91
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 74.01
Mean single sequence MFE -18.22
Consensus MFE -7.37
Energy contribution -8.48
Covariance contribution 1.11
Combinations/Pair 1.23
Mean z-score -1.95
Structure conservation index 0.40
SVM decision value 0.13
SVM RNA-class probability 0.598950
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16125322 91 - 22224390
UAAAUACUAAAUACCCGUGGGCUGACCGAGUCGGUCGUUAACCAUUAUAUAUUGAUCAAACAGAGAUCAACGAUUUGGA--AAAGUACGCUAA--
................(((..((..((((((((((.....)))........((((((.......)))))).))))))).--..))..)))...-- ( -22.20)
>DroSec_CAF1 4757 91 - 1
UAAAUACUAAAUACCCGUGGGCUGACCGAGUCGGUCGUUAACCAUUA--UAUUGAUCAAACAGAGAUCAACGAUUUGGA--AAAGUACGCUAAAA
................(((..((..((((((((((.....)))....--..((((((.......)))))).))))))).--..))..)))..... ( -22.20)
>DroSim_CAF1 5258 91 - 1
UAAAUACUAAAUACCCGUGGACUGACCGAGUCGGUCGUUAACCAUUA--UAUUGAUCAAACAGAGAUCAACGAUUUGGA--AAAGUACGCUAAAA
................(((.(((..((((((((((.....)))....--..((((((.......)))))).))))))).--..))).)))..... ( -21.40)
>DroEre_CAF1 4608 87 - 1
UAAACAUUAAAUUACCCCUAGCAGACCGAGUCGGUCGUUAACCAUUA----UUGAUCAAACAGAGAUCAACGAGUUGGA--AAAUUACGCUAA--
..................((((.(((((...))))).....((((..----((((((.......))))))..)..))).--.......)))).-- ( -19.10)
>DroYak_CAF1 4659 89 - 1
UAAACAUUAAAUUACACCUAGCAGGCCGAGUCGGUCGUUAACCAUUA----UUGAUCAAACAGAGAUCAACGAGUUGAAUAUAAGUACGCUAA--
..................((((.(((((...))))).(((((..(..----((((((.......))))))..))))))..........)))).-- ( -17.90)
>DroAna_CAF1 15357 80 - 1
CUAAUCCCAAUUAACUUU--GCAGACAAAUUCAACCCUUAACCACAAUUAAGCGAUCUAAUGAGGUUCA-------------AAGUACCUUAAAA
.............(((((--(..(((..(((....((((((......))))).)....)))...)))))-------------))))......... (  -6.50)
>consensus
UAAAUACUAAAUAACCGUGGGCAGACCGAGUCGGUCGUUAACCAUUA__UAUUGAUCAAACAGAGAUCAACGAUUUGGA__AAAGUACGCUAA__
...................(((.((((.....))))...............((((((.......))))))..................))).... ( -7.37 =  -8.48 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:34 2006