| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,801,386 – 1,801,477 |
| Length | 91 |
| Max. P | 0.904024 |
| Location | 1,801,386 – 1,801,477 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 100.00 |
| Mean single sequence MFE | -21.40 |
| Consensus MFE | -21.40 |
| Energy contribution | -21.40 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.00 |
| Structure conservation index | 1.00 |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.904024 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1801386 91 + 22224390 UUCGCCUUGCAUUUUAAUCAAUGCCAAUGAACUUGAAGUUUAUUUAGCGCGUACUCAAUAUCUCCCCUGGGAUAAGGUGCAUUGCCCACUU ...((..(((((((((....((((((((((((.....)))))))..).))))..........(((....))))))))))))..))...... ( -21.40) >DroSec_CAF1 9910 91 + 1 UUCGCCUUGCAUUUUAAUCAAUGCCAAUGAACUUGAAGUUUAUUUAGCGCGUACUCAAUAUCUCCCCUGGGAUAAGGUGCAUUGCCCACUU ...((..(((((((((....((((((((((((.....)))))))..).))))..........(((....))))))))))))..))...... ( -21.40) >DroSim_CAF1 9955 91 + 1 UUCGCCUUGCAUUUUAAUCAAUGCCAAUGAACUUGAAGUUUAUUUAGCGCGUACUCAAUAUCUCCCCUGGGAUAAGGUGCAUUGCCCACUU ...((..(((((((((....((((((((((((.....)))))))..).))))..........(((....))))))))))))..))...... ( -21.40) >consensus UUCGCCUUGCAUUUUAAUCAAUGCCAAUGAACUUGAAGUUUAUUUAGCGCGUACUCAAUAUCUCCCCUGGGAUAAGGUGCAUUGCCCACUU ...((..(((((((((....((((((((((((.....)))))))..).))))..........(((....))))))))))))..))...... (-21.40 = -21.40 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:05 2006