Locus 6429

Sequence ID X_DroMel_CAF1
Location 16,121,528 – 16,121,639
Length 111
Max. P 0.650436
window10496

overview

Window 6

Location 16,121,528 – 16,121,639
Length 111
Sequences 3
Columns 113
Reading direction reverse
Mean pairwise identity 83.69
Mean single sequence MFE -21.08
Consensus MFE -18.45
Energy contribution -17.90
Covariance contribution -0.55
Combinations/Pair 1.12
Mean z-score -1.33
Structure conservation index 0.88
SVM decision value 0.24
SVM RNA-class probability 0.650436
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16121528 111 - 22224390
UUCAGAUUCGCUUAC-AAAAAAAGCUCGAUCAGAUUUUAUAGCAUUUGAUCAGAGCUAAAGAAAGCAA-AAAGUAUGUCCUUCAUUAUAACUAUUCGCUGUUUCUGUCUGUUU
..(((((........-......(((((((((((((........)))))))).)))))..(((((((.(-(.((((((........))).))).)).)))..)))))))))... ( -23.60)
>DroSec_CAF1 1008 106 - 1
UUCAGAUCCGCUUACUAAAAUAAGCUCGAUCAGUUGCUAUAGAUGCUAAUCAGAGCUACAGAAAGCAAAAAAGUAUGUCCUUCAUUACAAUUAUUCGCUGUUUCUA-------
....((((.(((((......)))))..)))).((.(((...(((....)))..))).))(((((((......(((((.....)).)))........)))..)))).------- ( -16.74)
>DroSim_CAF1 1008 105 - 1
UUCAGAUUCGCUUAC-AACAUAAGCUCGAUCAGUUGCUAUAGCUGCUGAUCAGAGUUACAGAAAGCAACAAAGUAUGUCCUUCAUUCAAAUUAUUCGCUGUUUCUA-------
...(((..(((....-......((((((((((((.((....)).))))))).)))))...(((.(((........)))..))).............)).)..))).------- ( -22.90)
>consensus
UUCAGAUUCGCUUAC_AAAAUAAGCUCGAUCAGUUGCUAUAGCUGCUGAUCAGAGCUACAGAAAGCAA_AAAGUAUGUCCUUCAUUAAAAUUAUUCGCUGUUUCUA_______
...(((..(((...........((((((((((((..........))))))).)))))...(((.(((........)))..))).............)).)..)))........ (-18.45 = -17.90 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:31 2006