Locus 6428

Sequence ID X_DroMel_CAF1
Location 16,119,176 – 16,119,280
Length 104
Max. P 0.780381
window10495

overview

Window 5

Location 16,119,176 – 16,119,280
Length 104
Sequences 4
Columns 104
Reading direction reverse
Mean pairwise identity 97.58
Mean single sequence MFE -28.01
Consensus MFE -26.05
Energy contribution -26.55
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.93
Structure conservation index 0.93
SVM decision value 0.56
SVM RNA-class probability 0.780381
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16119176 104 - 22224390
AGUGCACACCCUUGGUUCUCAAUAGUCCACUGUUUCGAGUGAGCACUGUACAUACACUAAGGCUGGCACGAACACGACACUAAUUUAAGUUUGUUUCGGUUUUU
.((((.((.(((((((.....((((((((((......)))).).)))))......))))))).))))))((((.(((.((.(((....))).)).))))))).. ( -29.00)
>DroSec_CAF1 4128 103 - 1
AGUGCACACCCUUGGUUCUCAAUAGUCCACUGUUUCGAGUGAGCACUGUACAUACACUAAGGCUGGCACGAACACGUCACUAAUUUAAGUUUGUUUCGGCU-UU
.((((.((.(((((((.....((((((((((......)))).).)))))......))))))).))))))(((.(((..(((......))).))))))....-.. ( -25.90)
>DroEre_CAF1 4227 103 - 1
AGUGCACACCCUUGGUUCUUAAUAGUCCACUGUUUCGAGUGAGCACUGUACAUACACUAAGGCUGGCACGAACACGACACUAAUUUAAGUUUGUUUCGGUU-UU
.((((.((.(((((((.....((((((((((......)))).).)))))......))))))).))))))((((.(((.((.(((....))).)).))))))-). ( -29.00)
>DroYak_CAF1 8854 103 - 1
AGUGCACACCCUUGGUUCUCAUUAGUCCACUGUUUCGAGUGAGCACUGUACAUACACUAAGGCUGGCACGAACACGACACUAAUUUAAGUUUGUUUCGGUU-UU
.((((.((.(((((((......(((((((((......)))).).)))).......))))))).))))))((((.(((.((.(((....))).)).))))))-). ( -28.12)
>consensus
AGUGCACACCCUUGGUUCUCAAUAGUCCACUGUUUCGAGUGAGCACUGUACAUACACUAAGGCUGGCACGAACACGACACUAAUUUAAGUUUGUUUCGGUU_UU
.((((.((.(((((((.....((((((((((......)))).).)))))......))))))).))))))(((.((((.(((......))))))))))....... (-26.05 = -26.55 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:30 2006