Locus 6427

Sequence ID X_DroMel_CAF1
Location 16,115,848 – 16,115,966
Length 118
Max. P 0.948096
window10494

overview

Window 4

Location 16,115,848 – 16,115,966
Length 118
Sequences 3
Columns 118
Reading direction forward
Mean pairwise identity 81.21
Mean single sequence MFE -33.32
Consensus MFE -24.99
Energy contribution -25.43
Covariance contribution 0.45
Combinations/Pair 1.05
Mean z-score -2.28
Structure conservation index 0.75
SVM decision value 1.38
SVM RNA-class probability 0.948096
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16115848 118 + 22224390
AAAUAAUAAUAAGUGCCCCCCCCCCCCCACACACACACACACCCUACCAAACGGAGCGGGUUGGAAACGGGUGUGAGCCAAGAAAUAGGCCUUCGUGCCAAUUAGUCGCCUUAGUUCU
.........((((.((..(........(((.......(((((((..((....))........(....)))))))).(((.(....).)))....))).......)..))))))..... ( -25.86)
>DroSec_CAF1 891 94 + 1
AA---AUAAUAAGUGCCCCCUC---------------------CGAACAAACGGAGCGGGGUGGCAACGGGUGCGAGCCAAGAAAUAGGCCUUCGUGCCAAUUAGUCGCCUUAGUUCU
..---.........((((((((---------------------((......))))).)))))(((.((.((..((((((.(....).)))..)))..)).....)).)))........ ( -38.20)
>DroSim_CAF1 3724 94 + 1
AA---AUAAUAAGUGCCCCCUC---------------------CUAACACACGGAGCGGGGUGGCAACGGGUGCGAGCCAAGAAAUAGGCCUUCGUGCCAAUUAGUCGCCUUAGUUCU
..---.........((((((((---------------------(........)))).)))))(((.((.((..((((((.(....).)))..)))..)).....)).)))........ ( -35.90)
>consensus
AA___AUAAUAAGUGCCCCCUC_____________________CUAACAAACGGAGCGGGGUGGCAACGGGUGCGAGCCAAGAAAUAGGCCUUCGUGCCAAUUAGUCGCCUUAGUUCU
....................................................(((((((((((((....((..((((((........)))..)))..)).....)))))))).))))) (-24.99 = -25.43 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:29 2006