| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,114,938 – 16,115,037 |
| Length | 99 |
| Max. P | 0.928019 |
| Location | 16,114,938 – 16,115,037 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 71.86 |
| Mean single sequence MFE | -18.33 |
| Consensus MFE | -9.06 |
| Energy contribution | -9.25 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.49 |
| SVM decision value | 1.19 |
| SVM RNA-class probability | 0.928019 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16114938 99 + 22224390 CGCUAUCGCUAUCGCAAUCGAACCAGGUCCAGAACCAAUUGAAUUCACAUUCGAAUUCCAAUUC---GUAUCCAAAUCCAAGCGGGAGCGAAAACAAAAACG ((((..((((.(((....)))....((....((((.((((((((((......))))).))))).---)).)).....)).))))..))))............ ( -21.60) >DroSim_CAF1 2809 99 + 1 CGCUAUCGCUAUCGCAAUCGAACCAGGUCCAGAACCAAUUGAAUUCACAUUCAAAUUCAAAUUC---GUAUCCGAAUCCAAGCGGGAGCGAAAAUAAAAACG ((((..((((.(((....((((...(((.....)))..(((((((........))))))).)))---)....))).....))))..))))............ ( -21.50) >DroWil_CAF1 3054 87 + 1 AACAA------UCGCAUUUCAAUGAUAU------CAGUUUGAAUUCA---UCGACCACCAAUACAACAAAUUCAAUUCAAACCGAAAGCGAACGUCAAGCCG .....------((((.((((..((....------))(((((((((..---.......................))))))))).))))))))........... ( -12.91) >DroYak_CAF1 3000 93 + 1 CGCUA------UCGCAAUCGAACCAGGUCCAGAACCAAUUGAAUUCACAUUCAAAUUCCAAUUC---GUAUCCAAAUCCAAGCGAGAGCGAAAACAAAAACA ((((.------((((..........(((.....)))..((((((....))))))..........---..............)))).))))............ ( -17.30) >consensus CGCUA______UCGCAAUCGAACCAGGUCCAGAACCAAUUGAAUUCACAUUCAAAUUCCAAUUC___GUAUCCAAAUCCAAGCGAGAGCGAAAACAAAAACG ...........((((..(((.....(((.....)))..((((((....))))))............................)))..))))........... ( -9.06 = -9.25 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:28 2006