| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,112,986 – 16,113,090 |
| Length | 104 |
| Max. P | 0.938565 |
| Location | 16,112,986 – 16,113,090 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 89.44 |
| Mean single sequence MFE | -35.17 |
| Consensus MFE | -32.29 |
| Energy contribution | -31.97 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.92 |
| SVM decision value | 1.27 |
| SVM RNA-class probability | 0.938565 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16112986 104 - 22224390 AAGUUUACGCAUACAGUGGCAAUGUGUGUA-GUACGUGCAAGGGUACAACUGCAUGUGUGUGCAUAGUAGGUGGGAUUAGGGCUCAUCUGCACGGGCUAAGUUUC---- ..((.(((((((.((((.((..((..((..-...))..))...))...)))).))))))).))...(((((((((.......)))))))))..............---- ( -31.80) >DroSim_CAF1 815 101 - 1 AAGUUUACGCAUACAGUGGCAAUGUAUG----UACGUGCAAGGGUACAACUGCAUAUGUGUGCAUAGUAGGUGGGAUUAGGGCCCAUCUGCACGGGCUAAGUUUC---- .(((((..(((((((...(((..((.((----(((.(....).))))))))))...)))))))...(((((((((.......)))))))))..))))).......---- ( -35.70) >DroYak_CAF1 915 109 - 1 UAGUUUACGCAUACAGUGGCAAUUUACAUAUGUACGUGCAAGGGUACAACUGCAUGUGUGUGCAUAGUAGGUGGGAUUAGGGCCCACCUGCACGGGCAAAGUUUCCGAU ........((((((.(((........)))....(((((((.(.......))))))))))))))...(((((((((.......))))))))).((((.......)))).. ( -38.00) >consensus AAGUUUACGCAUACAGUGGCAAUGUAUGUA_GUACGUGCAAGGGUACAACUGCAUGUGUGUGCAUAGUAGGUGGGAUUAGGGCCCAUCUGCACGGGCUAAGUUUC____ ..((((..(((((((...(((..(((......)))((((....))))...)))...)))))))...(((((((((.......)))))))))..))))............ (-32.29 = -31.97 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:24 2006