| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,112,758 – 16,112,877 |
| Length | 119 |
| Max. P | 0.872797 |
| Location | 16,112,758 – 16,112,877 |
|---|---|
| Length | 119 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 88.33 |
| Mean single sequence MFE | -53.10 |
| Consensus MFE | -43.26 |
| Energy contribution | -45.60 |
| Covariance contribution | 2.34 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.58 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.872797 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16112758 119 + 22224390 CGGAUUGUGGGAUGGGUCGUUGUGGUAAGGGGGUCGUGGGCGGG-GGUUCUUAACCCAGAACGCGCUUAAGGCCCCUUCGCACGACCUAAAUUCCGCAUGGAAUCGCCGCUUUUGAGGCU ..((((((((((((((((((.((((...(((((((..(.(((.(-(((.....))))....))).)....))))))))))))))))))..))))))))....)))(((........))). ( -53.60) >DroSim_CAF1 586 120 + 1 CGGAUUGUGGGAGGGGUCGUCACGGUGAGGGGGUCGUGGGCGGGGGGUUCUUAACCCAGAACGCGCUUAAGGCCCCUUCGCACGACCUAAAUUCCGCAUGGAAUCGCCGCUUUUGAGGCU ..((((((((((.(((((((....(((((((((((.(((((((.((((.....))))....).)))))).))))))))))))))))))...)))))))....)))(((........))). ( -59.20) >DroYak_CAF1 682 120 + 1 CGGUUUGUGGGAGGGGUCGUCGUGAGGAAGGGGCCGUGGACAGGGGGUUCUUAACCCAGAACGCGCGUAAGGCCCCUUUGCACGACCUAAAUUCCGAAUGGAAUCUUCGAUUUUGAAACU .(((((((.((((((((((((....)(((((((((....((.(.(.(((((......))))).).)))..)))))))))..)))))))..(((((....))))))))).))....))))) ( -46.50) >consensus CGGAUUGUGGGAGGGGUCGUCGUGGUGAGGGGGUCGUGGGCGGGGGGUUCUUAACCCAGAACGCGCUUAAGGCCCCUUCGCACGACCUAAAUUCCGCAUGGAAUCGCCGCUUUUGAGGCU .....(((((((.(((((((....(((((((((((.((((((.(((((.....))))....).)))))).))))))))))))))))))...))))))).......(((........))). (-43.26 = -45.60 + 2.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:23 2006