Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,801,035 – 1,801,140 |
Length | 105 |
Max. P | 0.633304 |
Location | 1,801,035 – 1,801,140 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 83.37 |
Mean single sequence MFE | -32.02 |
Consensus MFE | -23.14 |
Energy contribution | -25.34 |
Covariance contribution | 2.20 |
Combinations/Pair | 1.07 |
Mean z-score | -1.69 |
Structure conservation index | 0.72 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.633304 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1801035 105 - 22224390 CCAUUUAAGAUGGCUUUCGGCAUUUGACAGCUGUCAGAAUUCGGGAUGCGGGAUUGAAAGCCAUUGGUUUUCGGUUUCCCGGAUUCCUGCCUGCAUGGGCAUUUC ........(((((((.(((.....))).))))))).((((((((((.....(((((((((((...))))))))))))))))))))).(((((....))))).... ( -39.80) >DroSec_CAF1 9585 94 - 1 CUAU-----------UUCGGCAUUUGACAGCUGUCAGAAUUCGGGAUGCGGGAUUGAAAGCCAUUGGUUUUCGGUUUUCCGGAUUCCUGCCUGCAUGGGGAUUUC ((((-----------...((((((((((....))))))....(((((.((((((((((((((...)))))))))))..))).)))))))))...))))....... ( -34.20) >DroSim_CAF1 9605 105 - 1 CCAUUUAAGAUGGCUUUCGGCAUUUGACAGCUGUCAGAAUUCGGGAUGCGGGAUUGAAAGCCAUUGGUUUUCGGUUUUCCGGAUUCCUGCCUGCAUGGGGAUUUC ((((....((......))((((((((((....))))))....(((((.((((((((((((((...)))))))))))..))).)))))))))...))))....... ( -36.00) >DroEre_CAF1 9658 91 - 1 -------AGAUAAUUUUCGGCAGUUGACAGCUGUCAGAAUUCGGGAUGGAGGAUUGAAAGCCAUUGGGU-------UUCCGGAUUCCUGCCUGCAUGGGCAUUUC -------...........((((((.....)))))).((((((((((.............(((....)))-------)))))))))).(((((....))))).... ( -26.01) >DroYak_CAF1 9869 95 - 1 -------AGAUGCUUUUCGGCAUUUGACAGCUGCCAGAAUUCGGGAUACAGGAUUGAAAGCCAUUGGAUU---GCUUUCUGGAUUCCAGCCUGCAUGGGCAUUUC -------(((((((....)))))))......((((...((.((((.....(((..((((((.........---)))))).....)))..)))).)).)))).... ( -24.10) >consensus C_AU___AGAUGGCUUUCGGCAUUUGACAGCUGUCAGAAUUCGGGAUGCGGGAUUGAAAGCCAUUGGUUUUCGGUUUUCCGGAUUCCUGCCUGCAUGGGCAUUUC ..................(((.((((((....))))))....(((((.(((((.((((((((...))))))))...))))).))))).))).............. (-23.14 = -25.34 + 2.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:04 2006