| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,100,012 – 16,100,116 |
| Length | 104 |
| Max. P | 0.557191 |
| Location | 16,100,012 – 16,100,116 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 79.43 |
| Mean single sequence MFE | -40.00 |
| Consensus MFE | -24.45 |
| Energy contribution | -24.84 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.557191 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16100012 104 - 22224390 GAAG--GCAAUUUGGCUUCGCUAAACAGGCCAGUCAGUGGUGUCG---CCCACAAACCACUGCCCUGGUAUGGCGAUUAUUCCGGCAAACUGCUGGCCAGUGCUCCCCC ...(--(((...((((.((((((.....(((((.(((((((....---.......)))))))..))))).))))))......((((.....)))))))).))))..... ( -38.50) >DroVir_CAF1 154425 95 - 1 GAGAACAGAAUUUGGCACAUUUCCGUCGACCGGUCGAUGAAAUGG---CCGCCAAGCCGUUGCCCUGGUAUGGCCAGUACUCGGGCAAGUCACUUGCC----------- (((.((.......(((.((((((.(((((....))))))))))))---))((((.((((......)))).))))..)).))).((((((...))))))----------- ( -38.40) >DroSec_CAF1 1941 104 - 1 GAGG--GCAAUUUGGCUUCGCUGAACAGGCCGGUCAGUGGAGUUG---CCCACAAGCCACUGCCCUGGUACGGCGAUUACUCCGGCAAACUGCUGGCCAGUGCUCCACC (.((--(((...((((.((((((.....(((((.((((((..(((---....))).)))))).)).))).))))))......((((.....)))))))).))))))... ( -41.80) >DroSim_CAF1 570 104 - 1 GAGG--GCAAUUUGGCUUCGCUGAACAGGCCGGUCAGUGGAGUUG---CCCACAAGCCACUGCCCUGGUACGGCGAUUACUCCGGCAAACUGCUGGCCAGUGCUCCACC (.((--(((...((((.((((((.....(((((.((((((..(((---....))).)))))).)).))).))))))......((((.....)))))))).))))))... ( -41.80) >DroEre_CAF1 15027 104 - 1 GAGG--GGAAUUUGGCCUCGCUGAACAGGCCCGUCAAUGGAAUCG---CCCAUAAGCCACUGCCCUGGUACGGCGACUACGCUGGCAAACUGCUGGCCAGUGCUCCCCC ..((--(((....(((((........))))).(((.((((.....---.))))..(((..(((....))).))))))..(((((((.........))))))).))))). ( -39.80) >DroYak_CAF1 646 107 - 1 GAGG--GGAAUUUGGCUUCGCUGAACAGGCCGGUCAAUGGAAUCGCCGCCCACAAGCCACUGCCCUGGUACGGCGACUACUCCGGCAAACUGCUGGCCAGUGCUCCGCC ..((--((...((((((..((.......(((((....(((..((((((.(((...((....))..)))..)))))))))..))))).....)).))))))..))))... ( -39.70) >consensus GAGG__GCAAUUUGGCUUCGCUGAACAGGCCGGUCAAUGGAAUCG___CCCACAAGCCACUGCCCUGGUACGGCGAUUACUCCGGCAAACUGCUGGCCAGUGCUCCACC ...........(((((.((((((.....(((((.((((((................))))))..))))).))))))......((((.....)))))))))......... (-24.45 = -24.84 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:14 2006