Locus 6418

Sequence ID X_DroMel_CAF1
Location 16,077,120 – 16,077,224
Length 104
Max. P 0.819077
window10477

overview

Window 7

Location 16,077,120 – 16,077,224
Length 104
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 89.31
Mean single sequence MFE -27.90
Consensus MFE -20.34
Energy contribution -21.03
Covariance contribution 0.69
Combinations/Pair 1.06
Mean z-score -2.24
Structure conservation index 0.73
SVM decision value 0.67
SVM RNA-class probability 0.819077
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16077120 104 + 22224390
UUCGGCGAUC----------------GAGCUCAAAGGGAAACCGUAUAAAUCAUAAUUACAUUUCCAAAUUAUUCAUCGUCAAUCAACAUAAUGAAAUUCGUUUUUGGGCUCUCAAACCU
...((.....----------------(((((((((((((((..(((...........))).)))))......(((((..(........)..)))))......)))))))))).....)). ( -20.60)
>DroSec_CAF1 23132 120 + 1
UUCGGCGAUCGGAGUGGAUCGCUGGCGAGCUCAAAGGGAAACCGUAUAAAUCAUAAUUACAUUUCCAAAUUAUUCAUCGUCAAUCAACAUAAUGAAAUACGUUUUUGGGCUCUCAAACCU
.(((((((((......))))))))).(((((((((((....))((((......(((((.........)))))(((((..(........)..)))))))))...)))))))))........ ( -33.80)
>DroEre_CAF1 22466 117 + 1
--AGGCGAUCGGAGUGGAUCUCCGCCGAGCUCAAAGGGA-ACCGUAUAAAUCAUAAUUACAUUUCCAAAUUAUUCAUCGUCAAUCAACAUAAUGAAAUACGAUUUUGGGCUCUCAAACCU
--.(((....((((.....)))))))(((((((((((((-(..(((...........))).))))).........(((((...(((......)))...))))))))))))))........ ( -29.90)
>DroYak_CAF1 20487 120 + 1
UUCGGCGAUCGGAGUGGAUCUCUGCGGAGCUCAAAGGGAAACCGUAUAAAUCAUAAUUACAUUUCCAAAUUAUUCAUCGUCAAUCAACAUAAUGAAAUACGUUUUUGGGCUCUCAAACUU
..(((.((((......)))).))).((((((((((((....))((((......(((((.........)))))(((((..(........)..)))))))))...))))))))))....... ( -27.30)
>consensus
UUCGGCGAUCGGAGUGGAUCUCUGCCGAGCUCAAAGGGAAACCGUAUAAAUCAUAAUUACAUUUCCAAAUUAUUCAUCGUCAAUCAACAUAAUGAAAUACGUUUUUGGGCUCUCAAACCU
...((....(((((.....)))))..(((((((((((((((..(((...........))).)))))......(((((..(........)..)))))......)))))))))).....)). (-20.34 = -21.03 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:13 2006