Locus 6417

Sequence ID X_DroMel_CAF1
Location 16,075,680 – 16,075,789
Length 109
Max. P 0.758401
window10476

overview

Window 6

Location 16,075,680 – 16,075,789
Length 109
Sequences 3
Columns 117
Reading direction reverse
Mean pairwise identity 82.49
Mean single sequence MFE -29.17
Consensus MFE -26.09
Energy contribution -25.98
Covariance contribution -0.11
Combinations/Pair 1.04
Mean z-score -1.22
Structure conservation index 0.89
SVM decision value 0.49
SVM RNA-class probability 0.758401
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16075680 109 - 22224390
CGCAACACUGUGCCAUUGUUGUCAGCAGAAAUCGAUGGCAUUGUCUCGGCCC--------GUUGGUUUGCAUGGCUUUUCUUUCUAUUAUAUUUUCUUCGAUCUGUUGUGUUAACCA
.((...((.(((((((((...((....))...))))))))).))....))..--------..(((((.(((..((...((...................))...))..))).))))) ( -28.21)
>DroSec_CAF1 21710 103 - 1
CGCAACACUGUGCCAUUGUUGUCAGCAGAAAUCGAUGGCAUUGUAU-GGAAC--------GUCGGUUCGCAUGGCUUUUCUUUCGC-----UAUUCUUCGAUCUGUUGUGUUAACCG
((((((((.(((((((((...((....))...))))))))).))..-.....--------(((((...(.(((((.........))-----))).).)))))..))))))....... ( -28.30)
>DroYak_CAF1 19025 109 - 1
CGCAACACUGUGCCAUUGUUGUCGACAGAAAUCGAUGGCAUUGUAU-GGCCCUUGGUAUGGUCGGCUCGCAUGGCUUUUCUUUCUC-------UUUUCCGAUCUGUUGUGUUAACCG
(((((((....(((((.((.((((((....(((((.(((.......-.))).)))))...))))))..))))))).........((-------......))..)))))))....... ( -31.00)
>consensus
CGCAACACUGUGCCAUUGUUGUCAGCAGAAAUCGAUGGCAUUGUAU_GGCCC________GUCGGUUCGCAUGGCUUUUCUUUCUC_____U_UUCUUCGAUCUGUUGUGUUAACCG
......((.(((((((((...((....))...))))))))).))..................(((((.(((..((...((...................))...))..))).))))) (-26.09 = -25.98 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:12 2006