Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,073,905 – 16,074,015 |
Length | 110 |
Max. P | 0.999878 |
Location | 16,073,905 – 16,074,015 |
---|---|
Length | 110 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 67.33 |
Mean single sequence MFE | -23.18 |
Consensus MFE | -14.77 |
Energy contribution | -14.89 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.21 |
Mean z-score | -2.16 |
Structure conservation index | 0.64 |
SVM decision value | 4.35 |
SVM RNA-class probability | 0.999878 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16073905 110 + 22224390 UCAUACUUAAAUAAUGUAGAAACAUUAUA----------AAUGUGGGUGCACUUUACCCAGCGUCCACAUAUUUCUGAUUCCAUUCCAUGAUGAAAGAUCAUGGAAAACCCGGGACAAAU ..........(((((((....))))))).----------.((((((..((..........))..))))))..(((((......(((((((((.....)))))))))....)))))..... ( -29.00) >DroSec_CAF1 19892 112 + 1 UGAUACUUCAAUAAAGUAAAAACAGUACAUGCAACCC-UAAAGUGGGUGCACUUUACCCAGCAUCCACAUAUUUCUGUUUCCAGU-------UAAACAGCUUGGAAAACCCGGGACAAAA ...(((((.....)))))................(((-....((((((((..........)))))))).........((((((((-------(....))).))))))....)))...... ( -25.90) >DroYak_CAF1 17306 101 + 1 -CCAACUGAA----------A-AUGAAUAUGCAAUGCUUAAGGUGGAUGCACUUCACCCAGAAUCCACACAUUUCCGAUUCCAGU-------UAAACAUCAUGGAAAACUAGGGACAAAA -((...((.(----------(-(((.....((...)).....((((((..............)))))).))))).)).(((((..-------.........))))).....))....... ( -14.64) >consensus UCAUACUUAAAUAA_GUA_AAACAGUAUAUGCAA__C_UAAAGUGGGUGCACUUUACCCAGCAUCCACAUAUUUCUGAUUCCAGU_______UAAACAUCAUGGAAAACCCGGGACAAAA ..........................................((((((((..........))))))))....(((((.((((((................))))))....)))))..... (-14.77 = -14.89 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:11 2006