Locus 6415

Sequence ID X_DroMel_CAF1
Location 16,073,564 – 16,073,684
Length 120
Max. P 0.931889
window10474

overview

Window 4

Location 16,073,564 – 16,073,684
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 95.42
Mean single sequence MFE -29.22
Consensus MFE -26.97
Energy contribution -27.22
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -2.08
Structure conservation index 0.92
SVM decision value 1.22
SVM RNA-class probability 0.931889
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16073564 120 + 22224390
AUUCGGCACUGCACAUGAAUUCCAAUUAUGUGUAUGAUUUGCAGUGUUUGCUAAUAUUUGCAUUCUCCUGUUUACCUUUGGAUGCAAUUUUGUCAGCUUCUUUCAUUGGGGCUUUCGAAU
((((((((.(((((((((.......)))))))))))..((.(((((...(((.(((.((((((((..............))))))))...))).)))......))))).))...)))))) ( -28.24)
>DroSec_CAF1 19550 120 + 1
ACUCGGCAAUGCACAUGAAUUCCAAUUAUGUGUAUGAUUUGCAGUGUUUGCUAAUAUUUGCAUUCUCCUGUUUACCUUUGGAUGCAAUUUUGUCAGCUUCUUUCAUUGGGGCUCUCGAAU
..((((..((((((((((.......))))))))))((.((.(((((...(((.(((.((((((((..............))))))))...))).)))......))))).)).)))))).. ( -29.64)
>DroEre_CAF1 19554 120 + 1
GCUCGGCAAUGCACAUGAAUUCCAAUUAUGUGUAUGAUUUGCAGUGUUUGCUAAUAUUUGCAUUCUCCUGUUUACAUUUGGAUGCAAUUUUGUCAGCUUCUUUCAUUGGGGCUUUCAAAA
((((....((((((((((.......))))))))))......(((((...(((.(((.((((((((...((....))...))))))))...))).)))......)))))))))........ ( -32.10)
>DroYak_CAF1 17007 120 + 1
ACUCGGCAAUGCACAUGAAUUCCAAUUAUGUGUAUGAUUUGCAGUGUUUGCUAAUAUUUGCAUUCCCCUGUUUACCUUUGGAUGCAAUUUUGUCAGCUUCUUUCAUUGGGGCUUUUCGAA
....(((.((((((((((.......))))))))))......(((((...(((.(((.((((((((....(....)....))))))))...))).)))......)))))..)))....... ( -26.90)
>consensus
ACUCGGCAAUGCACAUGAAUUCCAAUUAUGUGUAUGAUUUGCAGUGUUUGCUAAUAUUUGCAUUCUCCUGUUUACCUUUGGAUGCAAUUUUGUCAGCUUCUUUCAUUGGGGCUUUCGAAA
....(((.((((((((((.......))))))))))......(((((...(((.(((.((((((((..............))))))))...))).)))......)))))..)))....... (-26.97 = -27.22 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:10 2006