Locus 6414

Sequence ID X_DroMel_CAF1
Location 16,073,445 – 16,073,555
Length 110
Max. P 0.734940
window10473

overview

Window 3

Location 16,073,445 – 16,073,555
Length 110
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 80.09
Mean single sequence MFE -33.77
Consensus MFE -21.65
Energy contribution -23.28
Covariance contribution 1.63
Combinations/Pair 1.11
Mean z-score -1.87
Structure conservation index 0.64
SVM decision value 0.43
SVM RNA-class probability 0.734940
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16073445 110 + 22224390
------ACAUCCAAACAGGCAAACACGCACGCUGAGCCCCAGAGUCCUGCAAUUCCGGGAGUCCUGUAGUCCUGGAGUCCUGGAGCCCUGCUCUUACUAAGGACACAUAGACACAC----
------........((((((......((.......))(((.((((......)))).))).).))))).(((((..(((...(((((...))))).))).)))))............---- ( -29.20)
>DroSec_CAF1 19441 100 + 1
ACACACACACCCAAACAGGCAAACACGCAGCCUGAUCCCCAGAGUCCUGCAAUUCCGGGAGU----------------CCUGGAGCCCUGCUCUUUCUAAGCACACAUGGACACAC----
..........(((..(((((.........)))))....(((((.(((((......))))).)----------------.)))).....((((.......))))....)))......---- ( -24.40)
>DroEre_CAF1 19427 113 + 1
------ACAGCCAAACAGGCAAACACGCAGGCUGAGCCCCAGAGUCCUGCAG-UCCGGGAGUCCUGGAGUCCGGGAGUCCUGGAUUCCUGCUCUUUCUAAGGACACAUAGACACACAGCC
------...(((.....))).........(((((......(((((...(.((-(((((((.((((((...)))))).))))))))).).))))).((((.(....).))))....))))) ( -43.60)
>DroYak_CAF1 16853 114 + 1
------ACACACAAACAGGCAAACACGCAGGCUCAGCCCCAGAGUCCUGCAAUUCCCGGAGUCCUGGAGUCCUGGAGUCCUAGGGCUCUGCUCUUUCUAAGGACACAUAGACACACAGCC
------...........(((......((((((((.......))).))))).......(((((...((((((((((....))))))))))))))).((((.(....).))))......))) ( -37.90)
>consensus
______ACACCCAAACAGGCAAACACGCAGGCUGAGCCCCAGAGUCCUGCAAUUCCGGGAGUCCUGGAGUCCUGGAGUCCUGGAGCCCUGCUCUUUCUAAGGACACAUAGACACAC____
...............((((.......((((((((.....)))...)))))...(((((((.(((.(.....).))).)))))))..)))).....((((.(....).))))......... (-21.65 = -23.28 +   1.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:09 2006