Locus 6413

Sequence ID X_DroMel_CAF1
Location 16,073,184 – 16,073,303
Length 119
Max. P 0.717080
window10472

overview

Window 2

Location 16,073,184 – 16,073,303
Length 119
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 91.90
Mean single sequence MFE -30.07
Consensus MFE -24.35
Energy contribution -25.98
Covariance contribution 1.62
Combinations/Pair 1.05
Mean z-score -1.76
Structure conservation index 0.81
SVM decision value 0.39
SVM RNA-class probability 0.717080
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16073184 119 - 22224390
CAGUCCAACGAUGUAUAUGGCCAAACAUUUUCGUAUAUGAGUAUUUAAUUAAUCCGUAGUAGACUCAGGGCUGCCUUUUCUUUGCCC-AGCCCAUCCCUUCGAUGGGAUUGCAGAAAAAC
((((((.((((.....(((......)))..))))...(((((.....((((.....))))..))))))))))).......(((((..-..((((((.....))))))...)))))..... ( -30.30)
>DroSec_CAF1 19173 120 - 1
CAGUCCACCGAUGUAUACGUCCAAACAUUUUCGUAUAUGAGUAUUUAAUUAAUCCGUAGUUGACUCAGGGCUGCCUUUUCUUUGCCAGCGCCCAUCCCUUCGGUGGGCUUCCAGAAAAAC
.((((((((((.(((((((............)))))))((((...((((((.....)))))))))).((((.((.............))))))......))))))))))........... ( -34.12)
>DroEre_CAF1 19165 117 - 1
CAGUCCGCCGAUGUAGACGGCCAAACAUUUUCGUAUAUGAGUAUUUAAUUAAUCCGUAGUUGACUCAGAGCUGCCUUUUCUUUG-C--AGCCCAUCCCUUUUGUGGGCUUCCAGAAAAAC
(((..(((((.......))))................(((((...((((((.....))))))))))))..)))..((((((..(-.--(((((((.......))))))).).)))))).. ( -27.60)
>DroYak_CAF1 16537 118 - 1
CAGUCCACCAAUGUAUACAGCCAAACAUUUUCGUAUAUGAGUAUUUAAUUAAUCCGUAGUUGACUCAGGGCUGCCUUUUCUUUGCC--AGCCCAUCCCUUUUGUGGGCUUCCAGAAAAAC
((((((......((((((..............))))))((((...((((((.....)))))))))).))))))..((((((.....--(((((((.......)))))))...)))))).. ( -28.24)
>consensus
CAGUCCACCGAUGUAUACGGCCAAACAUUUUCGUAUAUGAGUAUUUAAUUAAUCCGUAGUUGACUCAGGGCUGCCUUUUCUUUGCC__AGCCCAUCCCUUCGGUGGGCUUCCAGAAAAAC
((((((......(((((((............)))))))((((...((((((.....)))))))))).))))))..((((((.......((((((((.....))))))))...)))))).. (-24.35 = -25.98 +   1.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:08 2006