Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,072,432 – 16,072,543 |
Length | 111 |
Max. P | 0.976079 |
Location | 16,072,432 – 16,072,543 |
---|---|
Length | 111 |
Sequences | 3 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 72.31 |
Mean single sequence MFE | -19.47 |
Consensus MFE | -13.55 |
Energy contribution | -15.00 |
Covariance contribution | 1.45 |
Combinations/Pair | 1.07 |
Mean z-score | -1.62 |
Structure conservation index | 0.70 |
SVM decision value | 1.76 |
SVM RNA-class probability | 0.976079 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16072432 111 + 22224390 AUUUUUUUUUUUCCGUAUUUCUCUUUUUUUUUCGCGGCACUGAAAUUGGCAAUGGCCGAUUUCUAUAUCACUUCAUAUUAUUCCCAUAUAUAUGGACGACGCCGACGACAG ...............................(((((((...(((((((((....)))))))))....................((((....)))).....)))).)))... ( -25.60) >DroSec_CAF1 18439 103 + 1 AUUUUUU------CAUAUUUUUCUUUUUUUUUCGCGGCACUGAGUUUGGCAAUGGCCGAUUUCUAUAUCACUCCAUAUUAUUCCCAUA--UAAGGACGACGCCGACGUCGG .......------...................((((((...(((.(((((....))))).)))........(((.(((.........)--)).)))....)))).)).... ( -18.40) >DroEre_CAF1 18450 87 + 1 --------------GUUUUUCCUCUUUUCUCUUUUCAAACUGAGAUUGGCAAUGGCCGAUUUCUAUAUCACUCCAUAUUAUUCCCAUA--CAAGGACGACGAC-------- --------------(((..((((..................(((((((((....))))))))).((((......))))..........--..)))).)))...-------- ( -14.40) >consensus AUUUUUU______CGUAUUUCUCUUUUUUUUUCGCGGCACUGAGAUUGGCAAUGGCCGAUUUCUAUAUCACUCCAUAUUAUUCCCAUA__UAAGGACGACGCCGACG_C_G ..................................((((...(((((((((....)))))))))....................((........)).....))))....... (-13.55 = -15.00 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:07 2006