Locus 6411

Sequence ID X_DroMel_CAF1
Location 16,071,235 – 16,071,341
Length 106
Max. P 0.596957
window10470

overview

Window 0

Location 16,071,235 – 16,071,341
Length 106
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 90.00
Mean single sequence MFE -26.02
Consensus MFE -19.08
Energy contribution -18.71
Covariance contribution -0.37
Combinations/Pair 1.08
Mean z-score -1.70
Structure conservation index 0.73
SVM decision value 0.13
SVM RNA-class probability 0.596957
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16071235 106 + 22224390
AUUAGGCUUAUAUAU--------------GUGUAUAUAUACAUUUGAGCCGACAUCUCUGUAUAUCCGACCUGUUAACAGUCCGCAAAAAAUGGGCUUUUGACACGAGAACAUCCAUUAU
....((((((...((--------------((((....)))))).))))))....((((.((.......)).((((((.((((((.......)))))).)))))).))))........... ( -26.00)
>DroSec_CAF1 17272 106 + 1
AUUAGGCUUAUAUAU--------------GUGUAUAUAUACAUUUGAGCCGACAUCUCUGUAUAUCCGACCUGUUAACAGUCCGCAAAAAAUGGGCUUUUGACACGAGAACAUCCAUUAU
....((((((...((--------------((((....)))))).))))))....((((.((.......)).((((((.((((((.......)))))).)))))).))))........... ( -26.00)
>DroEre_CAF1 17476 105 + 1
AUUAGGCUUAUAU---------------UGCGUAUAUAUACAUUUGGGCCGACAUCUCUGUACAUCCGAGCUGUUAGCAGUCCGCAAAAAAUGGGCUUUUGACACGAGAACAUCCAUUAU
....((((((...---------------((..(....)..))..))))))....((((.((........))((((((.((((((.......)))))).)))))).))))........... ( -21.00)
>DroYak_CAF1 14649 120 + 1
AUUAGGCUUAUAUAUGUGCAUGUGUACACGGGUAUAUAUACAUUUGAGCCGACAUCUCUGUAUAUCCGAGCUGUUAACAGUCCGCAAAAAAUGGGCUUUUGACACGAGAACAUCCAUUAU
....(((((((((((((((.(((....))).)))))))))....))))))....((((.((........))((((((.((((((.......)))))).)))))).))))........... ( -31.10)
>consensus
AUUAGGCUUAUAUAU______________GUGUAUAUAUACAUUUGAGCCGACAUCUCUGUAUAUCCGACCUGUUAACAGUCCGCAAAAAAUGGGCUUUUGACACGAGAACAUCCAUUAU
....((((((..................................))))))....((((((......))...((((((.((((((.......)))))).)))))).))))........... (-19.08 = -18.71 +  -0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:06 2006