Locus 6410

Sequence ID X_DroMel_CAF1
Location 16,070,518 – 16,070,627
Length 109
Max. P 0.931987
window10469

overview

Window 9

Location 16,070,518 – 16,070,627
Length 109
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 72.49
Mean single sequence MFE -25.95
Consensus MFE -14.93
Energy contribution -16.99
Covariance contribution 2.06
Combinations/Pair 1.10
Mean z-score -1.95
Structure conservation index 0.58
SVM decision value 1.22
SVM RNA-class probability 0.931987
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16070518 109 - 22224390
CCUGCUCACGCUCUCUCUCUCUCUGACUUCCGAUUGGUUUUCGGGAUUGUCGUGCGACCCCUUUUUCAAA---AAAAAGAAGGGGUUAAUUGCACACACAUA--------CAUCACAGCC
.........(((............(((((((((.......))))))..)))(((((((((((((((....---...)))))))))))....)))).......--------......))). ( -30.10)
>DroSec_CAF1 16365 96 - 1
CCUGCCCCUG-GCUCUCUCUCUCUGACUUCCGAUUGGUUUUCGGAAAUGUCGUGCGACCCCUUUCUCAAA---AAAA------GGUU------ACACACAUA--------CAUCACAGCC
.........(-(((..........(((((((((.......))))))..)))(((..(((..(((.....)---))..------))).------.))).....--------......)))) ( -21.00)
>DroEre_CAF1 15907 106 - 1
CCCGCA--------AUCGCUCGCUGACUUCCGAUUGGUUUUCGGGAUUGUCGUGCGAAACCCUUUAAAAAACAAAAA--AGGGGGUUAAUUGCAGACA----UAUAUGUACAACGCAUCC
...(((--------((...((((((((((((((.......))))))..)))).))))((((((((............--)))))))).))))).....----...((((.....)))).. ( -27.90)
>DroYak_CAF1 14014 107 - 1
CCUGCU--------CUCGCUCUCUGACUUCCGAUUGGUUUUCGGGAUUUUCGUGCGACCCCUUUUCCAAA---AAAA--AAGGGGUUAAUUGCACACAAAUACAUAUGUACAACACAUCC
...((.--------...))........((((((.......)))))).....((((((((((((((.....---..))--))))))))....))))......................... ( -24.80)
>consensus
CCUGCU________CUCGCUCUCUGACUUCCGAUUGGUUUUCGGGAUUGUCGUGCGACCCCUUUUUCAAA___AAAA__AAGGGGUUAAUUGCACACACAUA________CAACACAGCC
........................(((((((((.......))))))..)))((((((((((((................))))))))....))))......................... (-14.93 = -16.99 +   2.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:05 2006