Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,797,513 – 1,797,633 |
Length | 120 |
Max. P | 0.989471 |
Location | 1,797,513 – 1,797,633 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.00 |
Mean single sequence MFE | -38.42 |
Consensus MFE | -38.04 |
Energy contribution | -36.98 |
Covariance contribution | -1.06 |
Combinations/Pair | 1.16 |
Mean z-score | -2.39 |
Structure conservation index | 0.99 |
SVM decision value | 2.17 |
SVM RNA-class probability | 0.989471 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1797513 120 - 22224390 AAAACAUUAUCCUGCUGCCCGAGGUAAGAACUUUAUUUUAGCAUUUGUCUUGUCGCAAUCACAGUGCUAGCAGCCGAUCGUGUUGGCAUUGAUGAACUGCACGAACAAGUGCGGCACCUG ...............((((.(((((....)))))......((((((((.((((.(((.((((((((((((((........))))))))))).)))..))))))))))))))))))).... ( -39.10) >DroSec_CAF1 6017 120 - 1 AAAACAUUAUCCUGCUGCCCGAGGUAAGAACUUCGUUUUAGCAUUUGUCUUGCCGCAAUCACAGUGCUAGCAGCCGAUCGUGUUGGCAUUGAUGAACUGCACAAAUAAAUGCGGCACCUG ...............((((((((((....)))))).....((((((((.(((..(((.((((((((((((((........))))))))))).)))..))).))))))))))))))).... ( -39.20) >DroSim_CAF1 6014 120 - 1 AAAACAUUAUCCUGCUGCCCGAGGUAAGAACUUCAUUUUAGCAUUCGUCUUGCCGCAAUCACAGUGCUAGCAGCCGAUCGUGUUGGCAUUGAUGAACUGCACAAAUAAAUGCGGCACCUG ............((((((....(((((((..................)))))))(((.((((((((((((((........))))))))))).)))..)))..........)))))).... ( -35.17) >DroYak_CAF1 6160 120 - 1 AAAACAUUAUCCUGCUGCCCGAAGUAAGAACUUCACUUCAGCAUUUGUCUUGCCGCAAUCACAGUGCUAGCAGCCGAUCGUGUUGGCAUUGAUGAACUGCACGAACAGGUGCGGCACCUG ............(((((...(((((....)))))....))))).......(((((((.((((((((((((((........))))))))))).))).(((......))).))))))).... ( -40.20) >consensus AAAACAUUAUCCUGCUGCCCGAGGUAAGAACUUCAUUUUAGCAUUUGUCUUGCCGCAAUCACAGUGCUAGCAGCCGAUCGUGUUGGCAUUGAUGAACUGCACAAACAAAUGCGGCACCUG ...............((((.(((((....)))))......((((((((.(((..(((.((((((((((((((........))))))))))).)))..))).))))))))))))))).... (-38.04 = -36.98 + -1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:03 2006