Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,067,215 – 16,067,375 |
Length | 160 |
Max. P | 0.826621 |
Location | 16,067,215 – 16,067,335 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.22 |
Mean single sequence MFE | -24.01 |
Consensus MFE | -19.77 |
Energy contribution | -19.40 |
Covariance contribution | -0.37 |
Combinations/Pair | 1.09 |
Mean z-score | -1.75 |
Structure conservation index | 0.82 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.792509 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16067215 120 + 22224390 CCUAAAUUGAUUCUACGUAAUGCGUAGAGACAACCCAUCCCCAUCCCCAUUCUCAUUCCCAUCCUCAUCCAGUGGCUGGAGCUUAGACCACCACCCCAUUUUACUGUCUGGUGAUUCAAC .((((.(((.(((((((.....))))))).))).........................(((.((.(.....).)).)))...))))..(((((...((......))..)))))....... ( -21.60) >DroSec_CAF1 12964 114 + 1 CCCAAAUUGAUUCUACGUAAUGCGUAGAGACAACCCAUCCCCAU------UCCCACCCGCAUCCUCAUCCAGUGGCUGGAGCUUAGACCACCACCCCAUUUUACUGUCUGGUGAUUCAAC ......(((.(((((((.....))))))).)))...........------...((((.(((..........((((.(((........)))))))..........)))..))))....... ( -23.35) >DroEre_CAF1 12947 102 + 1 CCCCAAUUGAUUCUACGUAAUGCGUAGAGACAACCCCUCCC------------------CACCCCCCUCCGGUGGCUGGAGCUUAGAACACCACCCCAUUUGCCUGUCUGGUGGUUCAAC ......(((.(((((((.....))))))).)))...(((((------------------((((.......)))))..))))....((..((((((..((......))..))))))))... ( -29.70) >DroYak_CAF1 9338 109 + 1 CCCAAAUUGAUUCUACGUAAUGCGUAGAGACAACCCAUCCCC-----------CAUCCUCAUCCUCAUCCAGUGGCUGGAGCUUAGACCACCACCCCGUUUUACUGUCUGGUGAUUCAAC ......(((.(((((((.....))))))).))).........-----------..................((((.(((........)))))))...(..(((((....)))))..)... ( -21.40) >consensus CCCAAAUUGAUUCUACGUAAUGCGUAGAGACAACCCAUCCCC___________CAUCC_CAUCCUCAUCCAGUGGCUGGAGCUUAGACCACCACCCCAUUUUACUGUCUGGUGAUUCAAC ......(((.(((((((.....))))))).)))..................................(((((...)))))........(((((...((......))..)))))....... (-19.77 = -19.40 + -0.37)
Location | 16,067,255 – 16,067,375 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.65 |
Mean single sequence MFE | -28.27 |
Consensus MFE | -26.74 |
Energy contribution | -26.18 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.10 |
Mean z-score | -1.53 |
Structure conservation index | 0.95 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.826621 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16067255 120 + 22224390 CCAUCCCCAUUCUCAUUCCCAUCCUCAUCCAGUGGCUGGAGCUUAGACCACCACCCCAUUUUACUGUCUGGUGAUUCAACUUUAGCUUCUGUCUGCCAGAAAGUGAACUUUGCUUUUGGC .............................(((.((((((((.((..(.(((((...((......))..))))).)..)))))))))).)))...(((((((.(..(...)..)))))))) ( -26.00) >DroSec_CAF1 13004 114 + 1 CCAU------UCCCACCCGCAUCCUCAUCCAGUGGCUGGAGCUUAGACCACCACCCCAUUUUACUGUCUGGUGAUUCAACUUUAGCUGCUGUCUGCCAGAAAGUGAACUUUGCUUUUGGC ....------...................(((..(((((((.((..(.(((((...((......))..))))).)..)))))))))..)))...(((((((.(..(...)..)))))))) ( -29.40) >DroEre_CAF1 12987 102 + 1 C------------------CACCCCCCUCCGGUGGCUGGAGCUUAGAACACCACCCCAUUUGCCUGUCUGGUGGUUCAACUUUGGCUUCUGUCUGCCAGAAAGUGAACUUUGCUUUUGGC (------------------((((.......)))))(..((((..((...((((((..((......))..))))))(((..((((((........))))))...))).))..))))..).. ( -30.40) >DroYak_CAF1 9378 109 + 1 CC-----------CAUCCUCAUCCUCAUCCAGUGGCUGGAGCUUAGACCACCACCCCGUUUUACUGUCUGGUGAUUCAACUUUAGCUUCUGUCUGCCAGAAAGUGAACUUUGCUUUUGGC ..-----------................(((.((((((((.((..(.(((((..(.(.....).)..))))).)..)))))))))).)))...(((((((.(..(...)..)))))))) ( -27.30) >consensus CC___________CAUCC_CAUCCUCAUCCAGUGGCUGGAGCUUAGACCACCACCCCAUUUUACUGUCUGGUGAUUCAACUUUAGCUUCUGUCUGCCAGAAAGUGAACUUUGCUUUUGGC .............................(((..(((((((.((..(.(((((...((......))..))))).)..)))))))))..)))...(((((((.(..(...)..)))))))) (-26.74 = -26.18 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:02 2006