Locus 6405

Sequence ID X_DroMel_CAF1
Location 16,056,212 – 16,056,332
Length 120
Max. P 0.541212
window10461

overview

Window 1

Location 16,056,212 – 16,056,332
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.71
Mean single sequence MFE -30.20
Consensus MFE -23.14
Energy contribution -23.62
Covariance contribution 0.48
Combinations/Pair 1.03
Mean z-score -1.91
Structure conservation index 0.77
SVM decision value 0.02
SVM RNA-class probability 0.541212
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16056212 120 + 22224390
UCGAAUCUCAUCUGUUGUUGUUGACUUGGUGGAAUAUUAUGAUUUCCCAUAUUUUCUGCAGAUGUUUGACGGAGAUUAUCCGUUGAUAAAAAUGUCUGCUCGAUCGUAUUUCCGCUAUUA
((((....((.....))...))))..((((((((...(((((((.............((((((((((((((((.....)))))).....))))))))))..))))))).))))))))... ( -31.66)
>DroSec_CAF1 10328 118 + 1
UCGAAUCUCAUCUGUUGU--UUGACUUGGUGGAAUAUUAUGAUUUCCCAUAUUUUCUGCAGAUGUUUGACGGAGAUUAUCCGUUGAUAAAAAUGGCUGCUCGAUCGUAUUUCCGCUAUUA
((((((..(....)..))--))))..((((((((...(((((((.............((((....(..(((((.....)))))..).........))))..))))))).))))))))... ( -29.08)
>DroSim_CAF1 7014 118 + 1
UCGAAUCUCAUCUGUUGU--UUGACUUGGUGGAAUAUUAUGAUUUCCCAUAUUUUCUGCAGAUGUUUGACGGAGAUUAUCCGUUGAUAAAAAUGGCUGCUCGAUCGUAUUUCCGCUAUUA
((((((..(....)..))--))))..((((((((...(((((((.............((((....(..(((((.....)))))..).........))))..))))))).))))))))... ( -29.08)
>DroEre_CAF1 10632 118 + 1
UCGAAUCUCAUCCGUUGU--UUGACUCGGUGGAAUAUUAUGAUUUCCCAUAUUUUCUGCAGCUGUUUGACGGAGAUUAUCCGCUGAUAAAAAUGGCGGAUCGAUCCUAUAUCCGCUGUUA
..(.(((..((((((..(--((...((((((((....((((......)))).(((((((((....))).))))))...))))))))...)))..)))))).))).).............. ( -32.30)
>DroYak_CAF1 6590 118 + 1
UCGAAUCUCAUCUGUUGU--UUGACUUGGUGGAAUAUUAUGAUUUCCCAUAUUUUCUGCAGAUGUUUGACGGAGAUUAUCCGUUGAUAAAAAUGGCUGUUCGAUCGUAUUUCCGCUAUUA
((((((..(((((((.(.--..((..(((.(((((......))))))))..))..).))))))).(..(((((.....)))))..)...........))))))................. ( -28.90)
>consensus
UCGAAUCUCAUCUGUUGU__UUGACUUGGUGGAAUAUUAUGAUUUCCCAUAUUUUCUGCAGAUGUUUGACGGAGAUUAUCCGUUGAUAAAAAUGGCUGCUCGAUCGUAUUUCCGCUAUUA
((((....((.....))...))))..((((((((...(((((((....(((.(((((((((....))).)))))).)))(((((......)))))......))))))).))))))))... (-23.14 = -23.62 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:58 2006