Locus 6401

Sequence ID X_DroMel_CAF1
Location 16,050,587 – 16,050,699
Length 112
Max. P 0.984839
window10452

overview

Window 2

Location 16,050,587 – 16,050,699
Length 112
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 94.40
Mean single sequence MFE -28.88
Consensus MFE -27.90
Energy contribution -27.90
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.29
Structure conservation index 0.97
SVM decision value 1.99
SVM RNA-class probability 0.984839
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16050587 112 - 22224390
ACGACAAAUCGACAAUCAGUGUCACCCACGACAUUCGAAGAAGUGGAUCUCUGCUGUCCCUGCUCUCCGCACAUCCGCAUCUUCGUCGCUACUUCGUUUGC--------CACUCCGCAUA
((((.....((((....((((((......)))))).(((((.((((((...(((.(..........).))).)))))).))))))))).....)))).(((--------......))).. ( -29.20)
>DroSec_CAF1 4766 120 - 1
ACGACAAAUCGACAAUCAGUGUCACCCACGACAUUCGAAGAAGUGGAUCUCUGCUGUCCCUGCUCUCCGCACAUCCGCAUCUUCGUCGCUACUUCGUUUGCCACUUUGCCACUCCGCAUA
((((.....((((....((((((......)))))).(((((.((((((...(((.(..........).))).)))))).))))))))).....)))).........(((......))).. ( -29.20)
>DroEre_CAF1 5262 112 - 1
ACGACAAAUCGACAAUCAGUGUCACCCACGACAUUCGAAGAAGUGGAUCUCUGCUGUCCCUGCUCUCCGCACAUCCGCAUCUUCGUCGCUACUUCGUUUGC--------CACUCCGCAUA
((((.....((((....((((((......)))))).(((((.((((((...(((.(..........).))).)))))).))))))))).....)))).(((--------......))).. ( -29.20)
>DroYak_CAF1 1163 112 - 1
ACGACAAAUCGACAAUCAGUGUCACCCACGACAUUCGAAGAAGUGGAUCUCUGCUGUCCCUGCUCUCCGCACAUCCGCAUCUUCGUCGCUACUUCGUUUGC--------CACUUUGCCAC
((((.....((((....((((((......)))))).(((((.((((((...(((.(..........).))).)))))).))))))))).....))))....--------........... ( -27.90)
>consensus
ACGACAAAUCGACAAUCAGUGUCACCCACGACAUUCGAAGAAGUGGAUCUCUGCUGUCCCUGCUCUCCGCACAUCCGCAUCUUCGUCGCUACUUCGUUUGC________CACUCCGCAUA
((((.....((((....((((((......)))))).(((((.((((((...(((.(..........).))).)))))).))))))))).....))))....................... (-27.90 = -27.90 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:49 2006