Locus 6400

Sequence ID X_DroMel_CAF1
Location 16,049,276 – 16,049,373
Length 97
Max. P 0.571819
window10451

overview

Window 1

Location 16,049,276 – 16,049,373
Length 97
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 81.25
Mean single sequence MFE -16.16
Consensus MFE -15.09
Energy contribution -14.87
Covariance contribution -0.22
Combinations/Pair 1.05
Mean z-score 0.04
Structure conservation index 0.93
SVM decision value 0.08
SVM RNA-class probability 0.571819
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16049276 97 - 22224390
CCGAGAGCCAUCAAAAGUUGUGAUUGGUUUUUCCCCUACCCC-----------------------CAGCUGCCCAACAUCACCCCCCCUUUCACCAUCGGUGGCUUAAGACAUUUUAAGC
..(((((((((((.......))).))))))))..........-----------------------..........................((((...))))(((((((....))))))) ( -15.00)
>DroSim_CAF1 95035 119 - 1
CCGAGAGCCAUCAAAAGUUGUGAUUGGUUUUUCCCCUGCCCCAUACCCCUACCCCUCCCCCCCUCAAGCUGCCCAACAUCACCC-CCCUUUCACCUUCGGUGGCUUAAGACAUUUUAAGC
..(((((((((((.......))).))))))))..............................((.((((..((...........-.............))..)))).))........... ( -17.16)
>DroYak_CAF1 99342 94 - 1
CCGAGAGCCAUCAAAAGUUGUGAUUGGUUUUUCCCCUC--CC-----------------------CAGCUGCCCAACAUCACCC-CCCUCUCGCCAUCGGUGGCUUAAGACAUUUUAAGC
....((((((((...(((((.((..((.....))..))--..-----------------------)))))((............-.......))....)))))))).............. ( -16.31)
>consensus
CCGAGAGCCAUCAAAAGUUGUGAUUGGUUUUUCCCCUACCCC_______________________CAGCUGCCCAACAUCACCC_CCCUUUCACCAUCGGUGGCUUAAGACAUUUUAAGC
..(((((((((((.......))).))))))))...........................................................((((...))))(((((((....))))))) (-15.09 = -14.87 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:48 2006