Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 299,052 – 299,142 |
Length | 90 |
Max. P | 0.956909 |
Location | 299,052 – 299,142 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 79.84 |
Mean single sequence MFE | -17.90 |
Consensus MFE | -11.50 |
Energy contribution | -12.83 |
Covariance contribution | 1.34 |
Combinations/Pair | 1.11 |
Mean z-score | -2.45 |
Structure conservation index | 0.64 |
SVM decision value | 1.47 |
SVM RNA-class probability | 0.956909 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 299052 90 + 22224390 AUUAAAAACGUGUUUGAGAAUGCUCUUAGGAGUACGCAAAUGUACGUAGUAUACAUAUAUGUACAUCAAACCAUUUUAUAUCAGCUAACU ....((((.(.(((((((..(((((....)))))..)...((((((((.........))))))))))))))).))))............. ( -18.70) >DroSec_CAF1 42133 78 + 1 AGUAAAA---------AGAAUGGACUUAGGAGUACACAGAUGUACAUAGUU---GUAUAUUUACAUCAAACCAUUCUAUAUCAGCGAACU .......---------((((((((((....))).....((((((.(((...---...))).))))))...)))))))............. ( -16.60) >DroSim_CAF1 62761 76 + 1 AGUAAAA---------AGAAUGGUCUUAGGAGUACACAGAUGUACACAGUU---GUAU--GUACAUCAAACCAUUCUAUAUCAGCGAACU .......---------((((((((....(.....)...((((((((.....---...)--)))))))..))))))))............. ( -18.40) >consensus AGUAAAA_________AGAAUGGUCUUAGGAGUACACAGAUGUACAUAGUU___GUAUAUGUACAUCAAACCAUUCUAUAUCAGCGAACU ................(((((((.....(.....)...((((((((((.........))))))))))...)))))))............. (-11.50 = -12.83 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:46 2006