| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,045,310 – 16,045,424 |
| Length | 114 |
| Max. P | 0.564157 |
| Location | 16,045,310 – 16,045,424 |
|---|---|
| Length | 114 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 85.59 |
| Mean single sequence MFE | -37.40 |
| Consensus MFE | -31.07 |
| Energy contribution | -30.97 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.564157 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16045310 114 - 22224390 UCGUAUUUUAAG---AAGAAUACAUUUGGUGGCGUGCUGCAUUACACAA---AAAGGUGGAGCUUCAGGUGGUGGGGCUGUGCCACAGCUUGACCAUUAAAUGGCUGGCACUCCUCCUCA ..(((((((...---.)))))))....((.((.(((((......(((..---....))).((((...((((((.((((((.....)))))).))))))....))))))))).)).))... ( -41.30) >DroEre_CAF1 112930 112 - 1 UCGUAUUGCAAU---AAGAAUACGUCUGGUGGCGUGCUGCAUUAGAGAA-----AAGUGGUGCUUUAGGUGGUGGGGCUGUGCCAUAGCUUGACCAUUAAAUGGCUGGCACUCCUCCUCA .((((((.....---...))))))...((.((.(((((((((((.....-----...))))))....((((((.(((((((...))))))).))))))........))))).)).))... ( -36.30) >DroYak_CAF1 95304 120 - 1 ACGUAUUAUAAGAAGAAGAAUACGUCUGCUGGCGUGCAGCAUUAGCAAAAAAACAAGUGGAGCUUUAGGUGGUGGGGCUGUGCCACAGCUUGACCAUUAAAUGGCGGGCACUCCUCCUCA (((((((...........))))))).....((.((((.((....))...............(((...((((((.((((((.....)))))).))))))....)))..)))).))...... ( -34.60) >consensus UCGUAUUAUAAG___AAGAAUACGUCUGGUGGCGUGCUGCAUUAGAAAA___A_AAGUGGAGCUUUAGGUGGUGGGGCUGUGCCACAGCUUGACCAUUAAAUGGCUGGCACUCCUCCUCA ..(((((...........)))))....((.((.((((..((((............))))..(((...((((((.((((((.....)))))).))))))....)))..)))).)).))... (-31.07 = -30.97 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:43 2006