Locus 6397

Sequence ID X_DroMel_CAF1
Location 16,042,782 – 16,042,898
Length 116
Max. P 0.995215
window10444

overview

Window 4

Location 16,042,782 – 16,042,898
Length 116
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 70.49
Mean single sequence MFE -20.88
Consensus MFE -14.03
Energy contribution -14.70
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.77
Structure conservation index 0.67
SVM decision value 2.55
SVM RNA-class probability 0.995215
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16042782 116 - 22224390
UCCCGAAUCCCCAAUCUCCAUUCCCAUACCAAUACCCAGUCCUAUACCCA----CAUAACCAUACCCAUACCCAUACCCAUUUCCAUUCCCAUUCUGAUGGAGAGUGAUGGUGCAGGGGU
..................................................----.........((((...(((((.....((((((((........))))))))...)))).)...)))) ( -17.60)
>DroEre_CAF1 109529 109 - 1
--------CCUCCAUCUCA-CUCCUAUGCCCAUGU--ACUCAUAUACCCGUAUCCAUGCCCAUGCCCAUGCCCAUGCCCAUUUCCAUUCCCAUUCUGAUGGAGAGUGAUGGUGCAGGGGA
--------...........-.((((.(((((((.(--((((.............((((..(((....)))..))))......((((((........))))))))))))))).))).)))) ( -28.60)
>DroYak_CAF1 92671 99 - 1
--------CCUCCAUCUCC-AUCUCAUACCCAUU-------CCAUACCCAUACCCAUA-----ACCCAUACCCAUUUUCAUGCCCAUUCCCAAUCUGAUGGAGAGCGAUGGUGCAGGGGU
--------.((((.(((((-(((...........-------.................-----.................................))))))))(((....))).)))). ( -16.45)
>consensus
________CCUCCAUCUCC_AUCCCAUACCCAUA___A_UCCUAUACCCAUA_CCAUA_CCAUACCCAUACCCAUACCCAUUUCCAUUCCCAUUCUGAUGGAGAGUGAUGGUGCAGGGGU
................................................................(((...(((((.....((((((((........))))))))...)))).)...))). (-14.03 = -14.70 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:41 2006