Locus 6395

Sequence ID X_DroMel_CAF1
Location 16,040,181 – 16,040,301
Length 120
Max. P 0.941480
window10437 window10438

overview

Window 7

Location 16,040,181 – 16,040,301
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 95.56
Mean single sequence MFE -38.50
Consensus MFE -36.39
Energy contribution -36.83
Covariance contribution 0.45
Combinations/Pair 1.03
Mean z-score -2.00
Structure conservation index 0.95
SVM decision value 0.77
SVM RNA-class probability 0.847305
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16040181 120 + 22224390
CGAAGAACAUGCGUGUACUGUAUGCCAACAUACAUUCAUCCGUGCAAAUGCACACACAUGCCCGCGGGUAUUACGCGCCAGUUGCCGGCGUGUUUAAAUUGUUGUUCGCAAAAUAUUUGC
.(((.((((...((((..((((((....)))))).......((((....))))))))(((((....))))).(((((((.......)))))))......)))).)))((((.....)))) ( -38.10)
>DroEre_CAF1 107189 118 + 1
CGAAGAACAUGCGUGU-CUGUGUGCCAGCACACACUCAUCCGUGCAAAUGCACACACAUGCCCGCGGGUAUUACGCGCCGGUUGC-GGCGUGUUUAAAUUGUUGUUCGCAAAAUAUUUGC
.(((.((((...((((-.((((((....)))))).......((((....))))))))(((((....))))).((((((((....)-)))))))......)))).)))((((.....)))) ( -43.20)
>DroYak_CAF1 90194 120 + 1
CGAAGAACAUGCGUGCACUGUAUGCCAACACACAUUCAUCCGUGCAAAUGCACACACAUGCCCGCGGGUAUUACGCGCCAGUUGCCGGCGUGUUUAAAUUGUUGUUCGCAAAAUAUUUGC
.(((.((((((.(((((.((((((................))))))..))))).)).(((((....))))).(((((((.......)))))))......)))).)))((((.....)))) ( -34.19)
>consensus
CGAAGAACAUGCGUGUACUGUAUGCCAACACACAUUCAUCCGUGCAAAUGCACACACAUGCCCGCGGGUAUUACGCGCCAGUUGCCGGCGUGUUUAAAUUGUUGUUCGCAAAAUAUUUGC
.(((.((((...((((..((((((....)))))).......((((....))))))))(((((....))))).(((((((.......)))))))......)))).)))((((.....)))) (-36.39 = -36.83 +   0.45)

alignment

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secondary structure

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dotplot

Postscript

Window 8

Location 16,040,181 – 16,040,301
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 95.56
Mean single sequence MFE -42.07
Consensus MFE -39.10
Energy contribution -39.10
Covariance contribution 0.00
Combinations/Pair 1.08
Mean z-score -2.50
Structure conservation index 0.93
SVM decision value 1.32
SVM RNA-class probability 0.941480
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16040181 120 - 22224390
GCAAAUAUUUUGCGAACAACAAUUUAAACACGCCGGCAACUGGCGCGUAAUACCCGCGGGCAUGUGUGUGCAUUUGCACGGAUGAAUGUAUGUUGGCAUACAGUACACGCAUGUUCUUCG
((((.....))))(((...........((.(((((....).)))).)).........((((((((((((((((((....))))...((((((....))))))))))))))))))))))). ( -41.20)
>DroEre_CAF1 107189 118 - 1
GCAAAUAUUUUGCGAACAACAAUUUAAACACGCC-GCAACCGGCGCGUAAUACCCGCGGGCAUGUGUGUGCAUUUGCACGGAUGAGUGUGUGCUGGCACACAG-ACACGCAUGUUCUUCG
((((.....))))(((((.........((.((((-(....))))).)).......(((....(((((((((((..((((......))))))))..))))))).-...))).))))).... ( -41.20)
>DroYak_CAF1 90194 120 - 1
GCAAAUAUUUUGCGAACAACAAUUUAAACACGCCGGCAACUGGCGCGUAAUACCCGCGGGCAUGUGUGUGCAUUUGCACGGAUGAAUGUGUGUUGGCAUACAGUGCACGCAUGUUCUUCG
((((.....))))(((((.........((.(((((....).)))).)).......(((.((((.(((((((...((((((......))))))...))))))))))).))).))))).... ( -43.80)
>consensus
GCAAAUAUUUUGCGAACAACAAUUUAAACACGCCGGCAACUGGCGCGUAAUACCCGCGGGCAUGUGUGUGCAUUUGCACGGAUGAAUGUGUGUUGGCAUACAGUACACGCAUGUUCUUCG
((((.....))))(((...........((.((((((...)))))).)).........((((((((((((((((((....))))...((((((....))))))))))))))))))))))). (-39.10 = -39.10 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:36 2006