Locus 6394

Sequence ID X_DroMel_CAF1
Location 16,039,041 – 16,039,159
Length 118
Max. P 0.816596
window10436

overview

Window 6

Location 16,039,041 – 16,039,159
Length 118
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 88.64
Mean single sequence MFE -32.94
Consensus MFE -22.35
Energy contribution -22.47
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -3.39
Structure conservation index 0.68
SVM decision value 0.67
SVM RNA-class probability 0.816596
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16039041 118 + 22224390
UCAUCUCACCUUCCC--UCGAACAACAAACACCAUACACAUCGUAUUUAACCAUCCGAUGAUGCGUAUGACAGGCAAACCGCCUUGCCCCAAACGAAGGGGAUGAAUGCACAUGGAGAAC
...((((....((((--(((............(((((.((((((.............)))))).)))))...(((((......))))).....)).)))))(((......))).)))).. ( -29.32)
>DroEre_CAF1 106104 112 + 1
UCAUCUCACCUUCCC--UCGAACAACAAACA-----CACAUCGCAUUUAACCAUGCGAUGAUGCGUAUGACAGGCAGACCGCCUUUCUUCA-UCGCAGGGGAUGAAUACACUUGGAGAAC
...((((.(.(((((--((((.......((.-----((((((((((......)))))))).)).))..((.((((.....)))).))....-))).)))))).)....(....))))).. ( -33.50)
>DroYak_CAF1 88974 114 + 1
UCAUCUCACCUUCCCCUUCGAACAACAAACA-----CACAUCGUAUUUAGCCAUCCGAUGAUGCGUAUGACAGGCACACCGCCUUUCGUCA-UCGAAGGGGAUGAAUACACAUGGAGAAC
...((((....((((((((((.......((.-----(((((((.((......)).))))).)).)).((((((((.....))))...))))-))))))))))((......))..)))).. ( -36.00)
>consensus
UCAUCUCACCUUCCC__UCGAACAACAAACA_____CACAUCGUAUUUAACCAUCCGAUGAUGCGUAUGACAGGCAAACCGCCUUUCCUCA_UCGAAGGGGAUGAAUACACAUGGAGAAC
(((((.(.(((((.........................(((((((((............)))))).)))..((((.....))))..........)))))))))))............... (-22.35 = -22.47 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:34 2006