| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,036,180 – 16,036,300 |
| Length | 120 |
| Max. P | 0.969201 |
| Location | 16,036,180 – 16,036,300 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.09 |
| Mean single sequence MFE | -18.13 |
| Consensus MFE | -18.00 |
| Energy contribution | -18.00 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.62 |
| Structure conservation index | 0.99 |
| SVM decision value | 1.64 |
| SVM RNA-class probability | 0.969201 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16036180 120 + 22224390 UACUCACACCCACACUCAUACCCAUGCUCACACUCAUACUCACACUCACACUCACCUGGCCGGCAAGCUUAAUGAAGCUUGUGUAAUUGAUUUUAUGUUUGUUAAAAACGGCAGAAAAAG .......................................................(((.(((((((((((....)))))))).((((.(((.....))).))))....))))))...... ( -18.00) >DroEre_CAF1 103734 95 + 1 -------------------------ACUCACACUCACACUCAGACUCACACUCACCUGGCCGGCAAGCUUAAUGAAGCUUGUGUAAUUGAUUUUAUGUUUGUUAAAAACGGCAGAAAAAG -------------------------........((.....(((............)))((((((((((((....)))))))).((((.(((.....))).))))....)))).))..... ( -18.40) >DroYak_CAF1 86472 95 + 1 -------------------------ACUUAUACUCACACUCACACUCACACUCACCUGGCCGGCAAGCUUAAUGAAGCUUGUGUAAUUGAUUUUAUGUUUGUUAAAAACGGCAGAAAAAG -------------------------..............................(((.(((((((((((....)))))))).((((.(((.....))).))))....))))))...... ( -18.00) >consensus _________________________ACUCACACUCACACUCACACUCACACUCACCUGGCCGGCAAGCUUAAUGAAGCUUGUGUAAUUGAUUUUAUGUUUGUUAAAAACGGCAGAAAAAG .......................................................(((.(((((((((((....)))))))).((((.(((.....))).))))....))))))...... (-18.00 = -18.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:32 2006