Locus 6390

Sequence ID X_DroMel_CAF1
Location 16,033,904 – 16,034,024
Length 120
Max. P 0.514865
window10430

overview

Window 0

Location 16,033,904 – 16,034,024
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 80.74
Mean single sequence MFE -33.74
Consensus MFE -20.04
Energy contribution -19.50
Covariance contribution -0.54
Combinations/Pair 1.24
Mean z-score -1.96
Structure conservation index 0.59
SVM decision value -0.04
SVM RNA-class probability 0.514865
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16033904 120 + 22224390
CACUUUACUGGUAAGGGAUUGGCGGACUCCAUUUAGCACAUUUUCCAUCAGCGGAAUAGUUGGCACAAUCAAAGUGAAAUUGCUGCCUAGCUAUUGGCACCAACAAUUCUCAAAUGGAAA
.......(((.(((....))).)))..(((((((.((.............))(((((.((((((((.......))).......((((........))))))))).))))).))))))).. ( -27.12)
>DroEre_CAF1 101684 111 + 1
CCCUUUACUG-CGGAGGAUU--CCGACUCCAUUUAGCACAUUUGCCACCAGCGA-GCAGUUACCGCUAUC-AAGUGGAGUUGCUGCCUAGUU-UUGGU---GGCAAUUCUCAAAUGGAAA
..........-(((......--)))..(((((((((.....(((((((((((..-(((((..(((((...-.)))))....)))))...)).-.))))---)))))..)).))))))).. ( -38.90)
>DroYak_CAF1 84436 113 + 1
CCCUUUACUGGCAAAGUACU--CCGACUCCAUUUAGCACAUUUGCCAACAGCGG-AUAGUUGGCACCAUUAAAGUGGAGUUGCUGCCUAGUU-UUGGU---GGCAAUUCUCAAAUGGAAA
.....((((.....))))..--.....(((((((........(((((((.....-...)))))))..........((((((((..((.....-..)).---.)))))))).))))))).. ( -35.20)
>consensus
CCCUUUACUGGCAAAGGAUU__CCGACUCCAUUUAGCACAUUUGCCAACAGCGG_AUAGUUGGCACAAUCAAAGUGGAGUUGCUGCCUAGUU_UUGGU___GGCAAUUCUCAAAUGGAAA
..((((......))))...........(((((((..............((((......)))).(((.......)))(((((((((((........)))...))))))))..))))))).. (-20.04 = -19.50 +  -0.54)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:29 2006