Locus 6389

Sequence ID X_DroMel_CAF1
Location 16,032,860 – 16,032,971
Length 111
Max. P 0.779641
window10429

overview

Window 9

Location 16,032,860 – 16,032,971
Length 111
Sequences 3
Columns 118
Reading direction reverse
Mean pairwise identity 84.20
Mean single sequence MFE -40.20
Consensus MFE -27.59
Energy contribution -28.03
Covariance contribution 0.45
Combinations/Pair 1.03
Mean z-score -2.30
Structure conservation index 0.69
SVM decision value 0.55
SVM RNA-class probability 0.779641
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16032860 111 - 22224390
-------UCUGUACGGUGGGCACUCACCACAGAGCGACCGAGGCGGCAGGCCGCUGAUCUCGCAUGCGAUUGCGAUCGGCGCGGUAACAAAGCGAUAAUGCGAAAAUCGUGUAAUCCA
-------(((((..(((((....))))))))))(((.(((((((((....)))))....(((((......)))))))))))).........(.(((.(((((.....))))).)))). ( -42.20)
>DroEre_CAF1 100614 104 - 1
CGAUGCAUCUGUACGGUGGGCACUCACCACAGAGCAAC------------CCAGUGAU--CGCAUGCGAUUGCGAUCGGCGCGGUAACAAAGCGAUAAUGCGAAAAUCGUGUAAUCCA
...(((.(((((..(((((....)))))))))))))((------------((..((((--((((......))))))))..).)))......(.(((.(((((.....))))).)))). ( -34.90)
>DroYak_CAF1 83265 112 - 1
CGAUGCAUCUGUACGGUGGGCACUCACCACAGAGCAACAGC----ACUCGCUGCUGAU--CGCAUGCGAUUGCGAUCGGCGCGGUAACAAAGCGAUAAUGCGAAAAUCGUGUAAUCCA
.(.(((.(((((..(((((....))))))))))))).)...----((.(((.((((((--((((......)))))))))))))))......(.(((.(((((.....))))).)))). ( -43.50)
>consensus
CGAUGCAUCUGUACGGUGGGCACUCACCACAGAGCAAC_G______C__GCCGCUGAU__CGCAUGCGAUUGCGAUCGGCGCGGUAACAAAGCGAUAAUGCGAAAAUCGUGUAAUCCA
.......(((((..(((((....))))))))))((................(((((((..((((......))))))))))).(....)...))(((.(((((.....))))).))).. (-27.59 = -28.03 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:28 2006