| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,032,395 – 16,032,498 |
| Length | 103 |
| Max. P | 0.879583 |
| Location | 16,032,395 – 16,032,498 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 91.93 |
| Mean single sequence MFE | -23.77 |
| Consensus MFE | -23.02 |
| Energy contribution | -23.13 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.97 |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.879583 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16032395 103 - 22224390 UCC------AACUUCAGAUCCAACUAAAAAAGAUCCCAGCUUCGAUGGCUUUAAUUGAAGAUGCGUGCGCGCAUACUUAAAUCGCGCAAACAGCACUUUGAUCUUAAAA ...------....................((((((..(((((((((.......))))))).(((.((((((.((......))))))))....)))))..)))))).... ( -24.20) >DroEre_CAF1 100183 101 - 1 -------UCAACUUCAGAUCCAACUAAG-GAGAUCCCAGCUUCGAUGGCUUUAAUUGAAGAUGCGUGCGCGCAUACUUAAAUCGCGCAAACAGCACUUUGAUCUUAAAA -------....(((.((......)))))-((((((..(((((((((.......))))))).(((.((((((.((......))))))))....)))))..)))))).... ( -24.80) >DroYak_CAF1 82758 108 - 1 UCCAACUUCAACUUCAGAUCCAACUAAG-AAGAUCCCAGCGUCGAUGGCUUUAAUUGAAGAUGCGUGCGCGCAUACUUAAAUCGCGCAAACAGCACUUUGAUCUUAAAA ............................-(((((((((.......)))........((((.(((.((((((.((......))))))))....))))))))))))).... ( -22.30) >consensus UCC____UCAACUUCAGAUCCAACUAAG_AAGAUCCCAGCUUCGAUGGCUUUAAUUGAAGAUGCGUGCGCGCAUACUUAAAUCGCGCAAACAGCACUUUGAUCUUAAAA .............................((((((..(((((((((.......))))))).(((.((((((.((......))))))))....)))))..)))))).... (-23.02 = -23.13 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:27 2006