Locus 6386

Sequence ID X_DroMel_CAF1
Location 16,030,297 – 16,030,417
Length 120
Max. P 0.983069
window10424

overview

Window 4

Location 16,030,297 – 16,030,417
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 75.49
Mean single sequence MFE -35.33
Consensus MFE -19.64
Energy contribution -22.20
Covariance contribution 2.56
Combinations/Pair 1.12
Mean z-score -2.60
Structure conservation index 0.56
SVM decision value 1.93
SVM RNA-class probability 0.983069
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16030297 120 + 22224390
CCAAGUUGCCGAGACGUGGCGACACUUUGGUAAAAGCCGUCUGUCACCACGAAAUCGGUGAAAAGCAUUUGACAACUAAUUUCUCGAGGUGUCGACACCUUGCAGAAACGUUUUCCCCCG
.....(..((((..(((((.((((...((((....))))..)))).)))))...))))..).........((.(((...((((((((((((....))))))).))))).))).))..... ( -41.60)
>DroEre_CAF1 98181 101 + 1
------------------GCGACACUUUGGUAAAAGCCUUCUGUCGCCACGAAAUCGCCGAAAAGCAUUUGACAACUAAUUUCUCGAGGUGUCGACACCUUGCAGAAGCGUUUUCC-CCG
------------------((((((....(((....)))...))))))...((((.(((((((.....)))).........(((((((((((....))))))).))))))).)))).-... ( -30.70)
>DroYak_CAF1 80954 102 + 1
CCAGGUCGCCGAUGUGUGGCGACACUUUGGUAAAAGCCUUCUGUCACCACGAAAUCGCUGAAAAGCAUUUGACAACUAAUUUCUCAAGGUGUCGACACCUUG------------------
....(((...(((.(((((.((((....(((....)))...)))).)))))..)))(((....)))....)))...........(((((((....)))))))------------------ ( -33.70)
>consensus
CCA_GU_GCCGA___GUGGCGACACUUUGGUAAAAGCCUUCUGUCACCACGAAAUCGCUGAAAAGCAUUUGACAACUAAUUUCUCGAGGUGUCGACACCUUGCAGAA_CGUUUUCC_CCG
..............(((((.((((....(((....)))...)))).)))))............................((((((((((((....))))))).)))))............ (-19.64 = -22.20 +   2.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:24 2006