| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,028,020 – 16,028,118 |
| Length | 98 |
| Max. P | 0.700524 |
| Location | 16,028,020 – 16,028,118 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.37 |
| Mean single sequence MFE | -32.07 |
| Consensus MFE | -19.50 |
| Energy contribution | -19.50 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.700524 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16028020 98 - 22224390 -UGGUGGCGCCUCCCCGGCUCUUUUGUCCCGCCCACUUGGGCCCAAAAAUCUCACGCCACUUUGUCACACCAGUGUGCCG--UGCGGUGGCA-------------------CACAACCCC -.(((((((((.....)))..(((((....((((....)))).))))).......))))))...........((((((((--.....)))))-------------------)))...... ( -35.80) >DroSim_CAF1 89744 117 - 1 CUGGUGGCGCCUCCCCGGCUCUUCUGUCCCGCCCACUUG-GCCCAAAAAUCUCACGCCACUUUGUCACACCAGUUCGCCG--UGUGGUGGCAACACAACCCCAGUACGAAACAAAACCCC (((((((.(((.....(((...........))).....)-)))))..........(((((.....(((((.........)--))))))))).........))))................ ( -28.30) >DroYak_CAF1 78773 117 - 1 --GGUGGCGCCUCCCCGGCUCUUUUGUCCCGCCCACUUG-GCCCAAAAAUCUCACGCCACUUUGUCACACCAGUGCCACACCACUGGUGGCACCCCAAACCGAGUACAAAAUGAAACCCC --(((((((((.....)))..(((((..(((......))-)..))))).......))))))..((..((((((((......))))))))..))........................... ( -32.10) >consensus _UGGUGGCGCCUCCCCGGCUCUUUUGUCCCGCCCACUUG_GCCCAAAAAUCUCACGCCACUUUGUCACACCAGUGCGCCG__UGUGGUGGCA_C_CAA_CC_AGUAC_AAACAAAACCCC ..(((((((((.....)))...........((........)).............)))))).((((((..................))))))............................ (-19.50 = -19.50 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:18 2006