| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,027,750 – 16,027,860 |
| Length | 110 |
| Max. P | 0.752676 |
| Location | 16,027,750 – 16,027,860 |
|---|---|
| Length | 110 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.71 |
| Mean single sequence MFE | -36.13 |
| Consensus MFE | -25.29 |
| Energy contribution | -25.07 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.752676 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16027750 110 - 22224390 CCAGAUUCUC-GAUGUUCGCGG---------GGUAUUACGGGGUGUUCCUUGUGUGCUUUUUUGGGCACCAGCGGGAGUGGUAAACUAUUUGUCAUGCCUGUCAUACUCUCGUACAUCUU ..........-(((((.((.((---------(((((.((((((((..(((((.((((((....))))))))).))((((((....))))))..))).))))).))))))))).))))).. ( -37.20) >DroSim_CAF1 89518 96 - 1 CGAGAUUCUC-GAUGU--------------------UACGGGGUGUUCCCUGUGUGCUUUUUUGGGCA---CCGGGAGUGGUAAACUAUUUGUCAUGCCUGUCAUACUCUCGUACAUCUU .(((...)))-(((((--------------------.(((((((((((((.((((.(......).)))---).))))..((((.((.....))..))))....)))).)))))))))).. ( -31.70) >DroYak_CAF1 78543 117 - 1 CGAGAUUCAGCGAUGUUCCCGGGUGUUCCCGGGUGUUACGGGGUGUUCCUUGUGUGCUUUUUUGGGCA---CCGGGAGUGGUAAACUAUUUGUCAUGCCUGUCAUACUCUCGUACAUCUU ...........((((..((((((....))))))...((((((((((((((.((((.(......).)))---).))))..((((.((.....))..))))....)))).)))))))))).. ( -39.50) >consensus CGAGAUUCUC_GAUGUUC_CGG_________GGU_UUACGGGGUGUUCCUUGUGUGCUUUUUUGGGCA___CCGGGAGUGGUAAACUAUUUGUCAUGCCUGUCAUACUCUCGUACAUCUU ...........(((((....................(((((((....)))))))(((((....)))))....(((((((((((.((.....))..))))......))))))).))))).. (-25.29 = -25.07 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:17 2006