Locus 6380

Sequence ID X_DroMel_CAF1
Location 16,026,277 – 16,026,385
Length 108
Max. P 0.874438
window10414

overview

Window 4

Location 16,026,277 – 16,026,385
Length 108
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.39
Mean single sequence MFE -24.04
Consensus MFE -21.08
Energy contribution -21.28
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.49
Structure conservation index 0.88
SVM decision value 0.89
SVM RNA-class probability 0.874438
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16026277 108 + 22224390
GUUUUUUAAUCAAGCCUCCUGUCAAGUGUUUGCAAAACAAAUAUCGCGCUUAUCCAUCAAUCAAAACACGCAAUAUGGCA------------GCGUGACUUUCCACAACUAAGCGAGGCA
.............(((((((((((.(((((((.....))))))).(((....................)))....)))))------------).(((......)))........))))). ( -23.75)
>DroSec_CAF1 93844 108 + 1
GUUUUUUAAUCAAGCCUCCUGUCAAGUGUUUGCAAAACAAAUAUCGCGCUUAUCCAUCAAUCAAAACACGCAAUAUGGCA------------GCGUGACUUUCCACAACUAAGCGAGGCA
.............(((((((((((.(((((((.....))))))).(((....................)))....)))))------------).(((......)))........))))). ( -23.75)
>DroSim_CAF1 87073 108 + 1
GUUUUUUAAUCAAGCCUCCUGUCAAGUGUUUGCAAAACAAAUAUCGCGCUUAUCCAUCAAUCAAAACACGCAAUAUGGCA------------GCGUGACUUUCCACAACUAAGCGAGGCA
.............(((((((((((.(((((((.....))))))).(((....................)))....)))))------------).(((......)))........))))). ( -23.75)
>DroEre_CAF1 94697 108 + 1
GUUUUUUAAUCAAGCCUCCUGUCAAGUGUUUGCAAAACAAAUAUCGCGCUUAUCCAUCAAUCAAAACACGCAAUAUGGCA------------GCGUGACUUUCCACAACUAAGCGAGGCA
.............(((((((((((.(((((((.....))))))).(((....................)))....)))))------------).(((......)))........))))). ( -23.75)
>DroYak_CAF1 77136 120 + 1
GUUUUUUAAUCAAGCCUCCUGUCAAGUGUUUGCAAAACAAAUAUCGCGCUUAUCCAUCAAUCAAAACACGCAAUAUGGCAGCGGCAGCGGCAGCGUAACUUUCCACAACUAAGCGAGGCA
.............(((((((.....(((((((.....))))))).(((((...((..............((......)).((....)))).)))))...............)).))))). ( -25.20)
>consensus
GUUUUUUAAUCAAGCCUCCUGUCAAGUGUUUGCAAAACAAAUAUCGCGCUUAUCCAUCAAUCAAAACACGCAAUAUGGCA____________GCGUGACUUUCCACAACUAAGCGAGGCA
.............(((((..((...(((((((.....))))))).))(((((.................((......))...............(((......)))...)))))))))). (-21.08 = -21.28 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:14 2006