| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,026,069 – 16,026,187 |
| Length | 118 |
| Max. P | 0.800330 |
| Location | 16,026,069 – 16,026,187 |
|---|---|
| Length | 118 |
| Sequences | 3 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 80.98 |
| Mean single sequence MFE | -32.20 |
| Consensus MFE | -22.20 |
| Energy contribution | -22.32 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.800330 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16026069 118 + 22224390 CAGAUGGGUCUGUUCGGCUCGUUCGCAUUCGCAUUCGUAUAUUGUAUAUUGUAUAUUGUAAUACUGUAUACUGUAUACUGUAUACUGUAUUCGGGUGGGCUGGUCCUGGGACACGCCC .....((((.....(((((((..(((....))....((((((.((((((.((((((.(.....).)))))).)))))).)))))).......)..)))))))(((....)))..)))) ( -39.50) >DroSec_CAF1 93665 90 + 1 CAGAUGGGUCUGCUCGGCUCGUUCGC------AUUCGUAUAUUGUAUAUUGUAUAUUG----------------------UAUAUUGUAUUCGGGUGGGCUGGUCCUGGGACACGCCC ..((((((((.....))))))))..(------(((((.((((.((((((........)----------------------))))).)))).))))))(((..(((....)))..))). ( -27.60) >DroSim_CAF1 86894 90 + 1 CAGAUGGGUCUGCUCGGCUCGUUCGC------AUUCGUAUAUUGUACAUUGUAUAUUG----------------------UAUAUUGUAUUCGGGUGGGCUGGUCCUGGGACACGCCC .....((((.....(((((((..((.------....(((((.((((((........))----------------------)))).))))).))..)))))))(((....)))..)))) ( -29.50) >consensus CAGAUGGGUCUGCUCGGCUCGUUCGC______AUUCGUAUAUUGUAUAUUGUAUAUUG______________________UAUAUUGUAUUCGGGUGGGCUGGUCCUGGGACACGCCC ..((((((((.....)))))))).........(((((.((((.(((((................................))))).)))).)))))((((..(((....)))..)))) (-22.20 = -22.32 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:13 2006