Locus 6377

Sequence ID X_DroMel_CAF1
Location 16,024,860 – 16,024,977
Length 117
Max. P 0.912791
window10410

overview

Window 0

Location 16,024,860 – 16,024,977
Length 117
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 86.03
Mean single sequence MFE -29.66
Consensus MFE -23.34
Energy contribution -23.03
Covariance contribution -0.31
Combinations/Pair 1.24
Mean z-score -2.12
Structure conservation index 0.79
SVM decision value 1.09
SVM RNA-class probability 0.912791
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16024860 117 + 22224390
GUGCCCCCACAUAUAUAUGAGGCCAUAG---AAGCCCACAAGUAAAUUAUCCCCAACUGGGCCUCCCUUAAGAAUUCAAGUCGAUGAAUUCUAGCCCUAUUUAGCUUUUGGCUUUUAUGU
..(((..((........)).)))(((((---(((((...((((........(((....))).........((((((((......))))))))...........))))..)))))))))). ( -28.60)
>DroSec_CAF1 92528 113 + 1
GUGCCCC-----ACAUAUGAGGCCAUAGAAGAAGCCCAGAAGUAAAUUAUCCCCAACUGGGCCUCCCUUAAGAGUUCAAGUCGAGCGAUUCUAGCUC--UUUAGUUUUUGGCUUUUAUGU
.......-----(((((.(((((((.(((.((.((((((.................)))))).)).((.(((((((..((((....))))..)))))--)).))))).)))))))))))) ( -33.53)
>DroEre_CAF1 90105 107 + 1
---GCCC-----ACAUAUGAGGCCAUAG---AAGCCCAGAAGUAAAUUAUCCGCAAUUGGGCCUCCCUUAAGAAUUCAAGUCAAGGAAUUCUAGUUC--UUUAGCUGUUGGCUUUUAUGU
---....-----(((((.(((((((..(---(.((((((..((.........))..)))))).)).............((..(((((((....))))--)))..))..)))))))))))) ( -28.10)
>DroYak_CAF1 75760 107 + 1
---CCCC-----ACAUAUCAGGCCAUAG---AAGCCCAGAAGUAAAUUAUCCGCAACUGGGCCUCCCUUAAGAAUUCAAGUCAAGGAGUUUUAGUUC--UUUAGCUUUUGGCUUUUAUGU
---....-----(((((..((((((..(---(.((((((..((.........))..)))))).))............(((..((((((......)))--)))..))).)))))).))))) ( -28.40)
>consensus
___CCCC_____ACAUAUGAGGCCAUAG___AAGCCCAGAAGUAAAUUAUCCCCAACUGGGCCUCCCUUAAGAAUUCAAGUCAAGGAAUUCUAGCUC__UUUAGCUUUUGGCUUUUAUGU
............(((((.(((((((........((((((.................))))))........(((((((........)))))))................)))))))))))) (-23.34 = -23.03 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:11 2006