| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,021,867 – 16,021,984 |
| Length | 117 |
| Max. P | 0.655270 |
| Location | 16,021,867 – 16,021,984 |
|---|---|
| Length | 117 |
| Sequences | 3 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 86.86 |
| Mean single sequence MFE | -31.63 |
| Consensus MFE | -28.79 |
| Energy contribution | -28.57 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.91 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.655270 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16021867 117 - 22224390 UCAUUGUUCGGCAACUGGGCGACAAUGGAGACAAUAUUCCUUUUAUCUGGAGCAAGACCCUUUCAGUGAUUGUCCGACAAAUGGACAAUGGGACAGAUAGUCCACAGAAAGCU-GAAA ......((((((....((((.....((....))...((((........))))...).)))((((....((((((((.....)))))))).((((.....))))...)))))))-))). ( -33.80) >DroSec_CAF1 89554 110 - 1 UCAUUGUUCGGAAACUGGGCGACAAUGGAGACAAUAUUCCUUUUAUCUGGAGCAAGACCCUUUCAGUGAUUGUCCGACAAAUGGACAAUGGGACAGAUAGUCCAGACAGA-------- .(((((((((....)(((((((((.((....))...((((........))))..............)).)))))))......))))))))((((.....)))).......-------- ( -30.20) >DroEre_CAF1 87607 108 - 1 CCAUUGUUCGGAGACUGGGCGACAAUGGAGACAAUAUUCCUUUUAUCUGGAGCAAGACCCUUUCAGUGGUUGUCCGACCAAUGGACAAUGGGACAGAUAGUUC----------AGACA ((((((((((..(..((((((((..((....))...((((........))))................))))))))..)..))))))))))............----------..... ( -30.90) >consensus UCAUUGUUCGGAAACUGGGCGACAAUGGAGACAAUAUUCCUUUUAUCUGGAGCAAGACCCUUUCAGUGAUUGUCCGACAAAUGGACAAUGGGACAGAUAGUCCA_A_A_A____GA_A .(((((((((....)(((((((((.((....))...((((........))))..............)).)))))))......))))))))((((.....))))............... (-28.79 = -28.57 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:08 2006