Locus 6370

Sequence ID X_DroMel_CAF1
Location 16,019,699 – 16,019,809
Length 110
Max. P 0.896274
window10391

overview

Window 1

Location 16,019,699 – 16,019,809
Length 110
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 82.38
Mean single sequence MFE -32.06
Consensus MFE -24.03
Energy contribution -23.43
Covariance contribution -0.60
Combinations/Pair 1.18
Mean z-score -2.05
Structure conservation index 0.75
SVM decision value 0.99
SVM RNA-class probability 0.896274
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16019699 110 + 22224390
UAAGAUUGCGACUUGCCCAAAGCGAGUGAACUCAAGCACAUGU----------UUGAGUUUGCAGCCAUUCGUUUGUUGCCAACGAUGGGCGAAUAUGGUCGAAAAAUCAUUUGAAUGGG
...((((.(((((((((((..((..(..(((((((((....))----------)))))))..).))...(((((.......))))))))))).....)))))...))))........... ( -38.30)
>DroSec_CAF1 87480 98 + 1
UAAGAUUGCGACUUGCCCAAAGCGAGUGAACUCAAGCACAUGU----------UCGAGUUUGCAGCCGUUCGU-UGUUG-----------CGAAUAUGGUCGAAAAAUCAUUUGAAUGGG
...((((.(((((........((..(..(((((.(((....))----------).)))))..).)).((((((-....)-----------)))))..)))))...))))........... ( -27.80)
>DroSim_CAF1 81531 98 + 1
UAAGAUUGCGACUUGCCCAAAGCGAGUGAACUCAAGCACAUGU----------UCGGGUUUGCAGCCGUUCGU-UGUUG-----------CGAAUAUGGUCGAAAAAUCAUUUGAAUGGG
...((((.(((((........((..(..(((((.(((....))----------).)))))..).)).((((((-....)-----------)))))..)))))...))))........... ( -26.90)
>DroEre_CAF1 85457 119 + 1
CAAGAUUGCGACUUGCCAAAAGCAAGUGAGCCCAAGCACAUGUACUCGUAUGUAUAAGCUUGCAGCCAUUCAU-UGUUGCCAAAGAUGGGCAAAUAUGGUCGAAAAAUCAUUUGAAUGGG
.......((.((((((.....))))))..)).(((((...(((((......))))).)))))...(((((((.-..(((((.......)))))..(((((......))))).))))))). ( -32.50)
>DroYak_CAF1 70917 113 + 1
UGAGAUUGCGACUUGCCAAAAGCAAGUGAACUCAAGCACAUGU------AUGUUAGAGUUUGCAGGCAUUCAU-UGUUGCCCAAGAUGGGCAAAUAUGGUCAAAAAAUCAUUUGAAUGGG
.....((((.((((((.....))))))((((((.((((.....------.)))).)))))))))).((((((.-..((((((.....))))))..(((((......))))).)))))).. ( -34.80)
>consensus
UAAGAUUGCGACUUGCCCAAAGCGAGUGAACUCAAGCACAUGU__________UCGAGUUUGCAGCCAUUCGU_UGUUGCC_A_GAUGGGCGAAUAUGGUCGAAAAAUCAUUUGAAUGGG
.....((((.((((((.....))))))((((((......................))))))))))(((((((....(((((.......)))))..(((((......))))).))))))). (-24.03 = -23.43 +  -0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:54 2006