Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,784,033 – 1,784,125 |
Length | 92 |
Max. P | 0.573412 |
Location | 1,784,033 – 1,784,125 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 78.37 |
Mean single sequence MFE | -21.77 |
Consensus MFE | -11.56 |
Energy contribution | -13.67 |
Covariance contribution | 2.11 |
Combinations/Pair | 1.05 |
Mean z-score | -1.81 |
Structure conservation index | 0.53 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.573412 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1784033 92 - 22224390 CCGUUUGGAGCAUGUGCUCCAGAACACAG-CGCAAAAACAAUAACAAUUACCCAUAGUAAAGGAAGGCGUUCUGCACCUUCUGAAUGUGCUUC ...((((((((....))))))))....((-((((.............((((.....)))).((((((.(.....).))))))...)))))).. ( -28.00) >DroPse_CAF1 9601 77 - 1 CCAUUUCA-----------CUG---ACAGCCAUAAAGGCA--AACACUCACCCAUAGUACAGAAAGGCAUUCUGGACCUUCUGAAUGUGCUGC ........-----------...---...(((.....))).--............(((((((..(((((......).)))).....))))))). ( -13.60) >DroSec_CAF1 84 92 - 1 CCGUUUGGAGCAUGUGCUCCAGAACGCAG-UUCAAAAACAAUAACAAUUACCCAUAGUAAAGGAAGGCGUUCUGCACCUUCUGAAUGUGCCUC ...((((((((....))))))))..((((-(((..............((((.....)))).((((((.(.....).)))))))))).)))... ( -25.80) >DroSim_CAF1 84 92 - 1 CCGUUUGGAGCAUGUGCUCCAGAACGCAG-UUCAAAAACAAUAACAAUUACCCAUAGUAAAGGAAGGCGUUCUGCACCUUCUGAAUGUGCCUC ...((((((((....))))))))..((((-(((..............((((.....)))).((((((.(.....).)))))))))).)))... ( -25.80) >DroEre_CAF1 93 92 - 1 CCGUUUGGAGCAUGUGCUCCAGAAUGCAG-CACAAAAACAAUAACAAUUACCCAUAGUAAAGGAAGGCGUUCUGCACCUUCUGAAUAUGCUUC ...((((((((....))))))))....((-((...............((((.....)))).((((((.(.....).)))))).....)))).. ( -23.80) >DroPer_CAF1 8663 77 - 1 CCAUUUCA-----------CUG---ACAGCCAUAAAGGCA--AAAACUCACCCAUAGUACAGAAAGGCAUUCUGGACCUUCUGAAUGUGCUGC ........-----------...---...(((.....))).--............(((((((..(((((......).)))).....))))))). ( -13.60) >consensus CCGUUUGGAGCAUGUGCUCCAGAACACAG_CACAAAAACAAUAACAAUUACCCAUAGUAAAGGAAGGCGUUCUGCACCUUCUGAAUGUGCUUC ...((((((((....)))))))).............................((((.....((((((.(.....).))))))...)))).... (-11.56 = -13.67 + 2.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:58 2006