Locus 6369

Sequence ID X_DroMel_CAF1
Location 16,018,638 – 16,018,750
Length 112
Max. P 0.500000
window10390

overview

Window 0

Location 16,018,638 – 16,018,750
Length 112
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 88.35
Mean single sequence MFE -26.24
Consensus MFE -18.52
Energy contribution -18.64
Covariance contribution 0.12
Combinations/Pair 1.08
Mean z-score -1.69
Structure conservation index 0.71
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16018638 112 + 22224390
---UUUUCUGAGUAAUAUGCGGCAGGGCGAGGCCUUGGCAAUCUGUGGUCAGUCCGACAAUCCAAUAAGAUAAAAAGCUGCUGGAAACGAAAAAAAAAAC-GGAAG----AAGAAAAGGA
---(((((((........(((((.((((..((((.(((....))).)))).))))....(((......))).....)))))((....))..........)-)))))----)......... ( -27.10)
>DroSec_CAF1 86449 106 + 1
UUUUUUUCUGAGUAAUAUGCGGCAGGGCGAGGCCUUGGCAAUCUGUGGUCAGUCCGACAAUCCAAUAAGAUAAAAAGCUGCUGGGAA---------AAAA-AGAGG----AAGAAAAGGA
(((((((((.((((....(((.((((((...)))))).).((((.(((...(.....)...)))...)))).....)))))).))))---------))))-)....----.......... ( -27.30)
>DroSim_CAF1 80508 106 + 1
UUUUUUUCUGAGUAAUAUGCGGCAGGGCGAGGCCUUGGCAAUCUGUGGUCAGUCCGACAAUCCAAUAAGAUAAAAAGCUGCUGGGAA---------AAAA-GGAGG----AAGAAAAGGA
(((((((((.((((....(((.((((((...)))))).).((((.(((...(.....)...)))...)))).....)))))).))))---------))))-)....----.......... ( -27.00)
>DroEre_CAF1 84563 105 + 1
UUCUUUUCUGAGUAAUAUGCGGCAGGGCGAGGCCGUGGCAAUCUGUGGUCAGUCCGACAAUCCAAUAAGAUAAAAAGCCACUGGAAA---------AGA--GCAAA----AGGAAAAGGA
(((((((((........((((((.((((..(((((..(....)..))))).))))....(((......))).....))).((.....---------)).--)))..----.))))))))) ( -29.00)
>DroYak_CAF1 69758 111 + 1
UUUUUAUCUGAGUAAUAUGCGGCAGGGCGAGGCCUUGGCAAUCUGUGGUCAGUCCGACAAUCCAAUAAGAUAAAAAGCUACUGGAAA---------AAAAAGGAAAAAAUAAGAAAAGGA
(((((((((((.((......(.((((((...)))))).)......)).))))(((.....((((...((........))..))))..---------.....)))....)))))))..... ( -20.80)
>consensus
UUUUUUUCUGAGUAAUAUGCGGCAGGGCGAGGCCUUGGCAAUCUGUGGUCAGUCCGACAAUCCAAUAAGAUAAAAAGCUGCUGGAAA_________AAAA_GGAAG____AAGAAAAGGA
....(((((.((((....(((.((((((...)))))).).((((.(((...(.....)...)))...)))).....)))))))))))................................. (-18.52 = -18.64 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:53 2006