Locus 6366

Sequence ID X_DroMel_CAF1
Location 16,015,436 – 16,015,536
Length 100
Max. P 0.701809
window10382

overview

Window 2

Location 16,015,436 – 16,015,536
Length 100
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 79.91
Mean single sequence MFE -28.42
Consensus MFE -18.80
Energy contribution -19.55
Covariance contribution 0.75
Combinations/Pair 1.12
Mean z-score -1.78
Structure conservation index 0.66
SVM decision value 0.35
SVM RNA-class probability 0.701809
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16015436 100 - 22224390
--------------------UUGUCAGCUCAUGUGGGUGUUGGUGUUACAAUUUGUUGGAUACAUUUCCCAAAAGCAUUAAUUGUUCGAAGGGGGAAGAAUUUGGCAAGUAGUCAAAGAG
--------------------.(..((((.(......).))))..)..((.((((((..(((...((((((...((((.....)))).....))))))..)))..)))))).))....... ( -23.20)
>DroSim_CAF1 77312 116 - 1
GUACGUAUGUAUUGCGAAUUUUGUCAGCUCAUGUGGGUGUUGG--AUACAAUUUGCUGGAUACAUUUCCCAAAAGCAUUAAUUGUUCGAAUGGGG--GAAUUUGGCAAGUAGUCAAAGAG
.......(((((((((((((.((((.((((....))))....)--))).)))))))..))))))(..((((..((((.....))))....)))).--.).((((((.....))))))... ( -31.20)
>DroEre_CAF1 81698 103 - 1
----GUAUAUAUUUCGAAUUUUGUCAGCUCAUGUGGGUGU-------CCAAUUUGUUGGAUACAUUUCCCAAAAGCAUUAAUUGCUCGAAUGGG---GGAUUUGGCAAGU---CAAAGAG
----.........((....((((((((.........((((-------((((....))))))))((..((((..((((.....))))....))))---..)))))))))).---....)). ( -28.90)
>DroYak_CAF1 66840 102 - 1
-------UAUAUUUCGAAUUUUGUCAGCUCAUGUGGGUGU-------CCAAAUUGUUGGAUACAUUUCCCAAAAGCAUUAAUUGCUCGAAUGGGGG-GGAUUUGGCAAGU---CAAAGAG
-------......((....((((((((.((......((((-------((((....)))))))).(..((((..((((.....))))....))))..-))).)))))))).---....)). ( -30.40)
>consensus
_______UAUAUUUCGAAUUUUGUCAGCUCAUGUGGGUGU_______ACAAUUUGUUGGAUACAUUUCCCAAAAGCAUUAAUUGCUCGAAUGGGG__GAAUUUGGCAAGU___CAAAGAG
.......................((.((((....))))............((((((..(((....((((((..((((.....))))....))))))...)))..)))))).......)). (-18.80 = -19.55 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:45 2006