Locus 6364

Sequence ID X_DroMel_CAF1
Location 16,014,445 – 16,014,565
Length 120
Max. P 0.998968
window10379

overview

Window 9

Location 16,014,445 – 16,014,565
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.65
Mean single sequence MFE -29.06
Consensus MFE -28.46
Energy contribution -28.30
Covariance contribution -0.16
Combinations/Pair 1.03
Mean z-score -1.87
Structure conservation index 0.98
SVM decision value 3.30
SVM RNA-class probability 0.998968
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16014445 120 - 22224390
AUAUAACAACAACGAAAAUUCGCUACAAGGUAAGUGUGUGUACGUAAGUAAGUAUAUGCGCGAAAUACCCUAGGGUUUUCAAUCAUUACUCAAAUUAUGAUGGUUUAAUUUGGGCGCUUU
....................((((....(((((((((((((((........))))))))))((((.(((....))))))).....)))))(((((((........))))))))))).... ( -28.90)
>DroSec_CAF1 82359 120 - 1
AUAUAACAACAACAAGUAUUCGCUACAAGGUAAGUGUGUGUACGUAAGUAAGUAUAUGCGCGAAAUACCCUAGGGUUUUCAAUCAUUACUCAAAUUAUGAUGGUUUAAUUUGGGCGCUUU
....................((((....(((((((((((((((........))))))))))((((.(((....))))))).....)))))(((((((........))))))))))).... ( -28.90)
>DroSim_CAF1 76355 120 - 1
AUAUAACAACAACAAGUAUUCGCUACAAGGUAAGUGUGUGUACGUAAGUAAGUAUAUGCGCGAAAUACCCUAGGGUUUUCAAUCAUUACUCAAAUUAUGAUGGUUUAAUUUGGGCGCUUU
....................((((....(((((((((((((((........))))))))))((((.(((....))))))).....)))))(((((((........))))))))))).... ( -28.90)
>DroEre_CAF1 80763 114 - 1
AUAUAAC------AAAUAUUCGCUACAAGGUAAGUGUGUGUACGCAAGCAAGUGUAUGCGCGAAAUACCCUAGGGUUUUCAAUCAUUACUCAAAUUAUGAUGGUUUAAUUUGGGCGCUCU
.......------.......((((....(((((..((((((((((......))))))))))((((.(((....))))))).....)))))(((((((........))))))))))).... ( -29.70)
>DroYak_CAF1 65852 117 - 1
AUAUAACAAC---AAAAAUUCGCUACAAGGUAAGUGUGUGUACGCAAGUAAGUAUAUGCGCGAAAUACCCUAGGGUUUUCAAUCAUUACUCAAAUUAUGAUGGUUUAAUUUGGGCGCUUU
..........---.......((((....(((((((((((((((........))))))))))((((.(((....))))))).....)))))(((((((........))))))))))).... ( -28.90)
>consensus
AUAUAACAACAACAAAUAUUCGCUACAAGGUAAGUGUGUGUACGUAAGUAAGUAUAUGCGCGAAAUACCCUAGGGUUUUCAAUCAUUACUCAAAUUAUGAUGGUUUAAUUUGGGCGCUUU
....................((((....(((((((((((((((........))))))))))((((.(((....))))))).....)))))(((((((........))))))))))).... (-28.46 = -28.30 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:43 2006