Locus 6363

Sequence ID X_DroMel_CAF1
Location 16,014,199 – 16,014,319
Length 120
Max. P 0.500000
window10378

overview

Window 8

Location 16,014,199 – 16,014,319
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.99
Mean single sequence MFE -27.50
Consensus MFE -25.18
Energy contribution -25.38
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.09
Structure conservation index 0.92
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16014199 120 + 22224390
UGACAGAUUCGUUUACAGAGCCAGAGGCUUGACAUUUUGAUCGCUAUCUUAUAUGCAAAACAAACAGGCCUUUGAUUGCAUUGAACAUUAUGCACCCCGACCAUAAAGUCGGGUACCCGG
.........((..(((.....((((((((((....((((...((..........))....))))))))))))))..(((((........)))))..(((((......))))))))..)). ( -30.00)
>DroSec_CAF1 82115 113 + 1
UGACAGAUUCGUUUACAGAGCCAGAGGCUUGACAUUUUGAUCGCUAUCUUAUAUGCAAAACAAACAGGCCUUUGAUUGCAUUGAACAUUAUGCACCCCGACCAUAAAGUCGGC-------
.....................((((((((((....((((...((..........))....))))))))))))))..(((((........)))))..(((((......))))).------- ( -25.70)
>DroSim_CAF1 76117 113 + 1
UGACAGAUUCGUUUACAGAGCCAGAGGCUUGACAUUUUGAUCGCUAUCUUAUAUGCAAAACAAACAGGCCUUUGAUUGCAUUGAACAUUAUGCACCCCGACCAUAAAGUCGGC-------
.....................((((((((((....((((...((..........))....))))))))))))))..(((((........)))))..(((((......))))).------- ( -25.70)
>DroEre_CAF1 80503 113 + 1
UGACUGAUUCGUUUACAGAGCCAGCGGCUUGACAUUUUGAUCGCUAUCUUAUAUGCAAAACAAACAGGCCUUUGAUUGCAUUCAACAUUAUGCACCCCGACCACAAAGUCGGG-------
.(.(((..((.......))..))))((((((....((((...((..........))....))))))))))......(((((........))))).((((((......))))))------- ( -26.40)
>DroYak_CAF1 65604 113 + 1
UGACAGAUUCGUUUACGCAGCCAGAGGCUUGACAUUUUGAUCGCUAUCUUAUAUGCAAAACAAACAGGCCUUUGAUUGCAUUGAACAUUAUGCACCCCGACCAUAAAGUCGGC-------
..........(((((.(((..((((((((((....((((...((..........))....))))))))))))))..)))..)))))..........(((((......))))).------- ( -29.70)
>consensus
UGACAGAUUCGUUUACAGAGCCAGAGGCUUGACAUUUUGAUCGCUAUCUUAUAUGCAAAACAAACAGGCCUUUGAUUGCAUUGAACAUUAUGCACCCCGACCAUAAAGUCGGC_______
.....................((((((((((....((((...((..........))....))))))))))))))..(((((........)))))..(((((......)))))........ (-25.18 = -25.38 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:41 2006