Locus 6362

Sequence ID X_DroMel_CAF1
Location 16,013,444 – 16,013,552
Length 108
Max. P 0.894618
window10377

overview

Window 7

Location 16,013,444 – 16,013,552
Length 108
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 90.00
Mean single sequence MFE -36.77
Consensus MFE -27.27
Energy contribution -28.59
Covariance contribution 1.31
Combinations/Pair 1.03
Mean z-score -2.68
Structure conservation index 0.74
SVM decision value 0.98
SVM RNA-class probability 0.894618
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16013444 108 - 22224390
AAAAACCGAGCGAAAAAUGAAGAAAAUGUGGCGAUCAUCGUUGGCUCGUUUCAGGCGUUACAGCGU--------UUUAGCGCUAAGUUUUCAGCGUUUUUCGGUUUGCGUUCGCGU----
....(((((((((((((((..((((((.(((((.....(((((...(((.....)))...))))).--------.....))))).))))))..)))))))).(....)))))).))---- ( -35.20)
>DroSec_CAF1 81351 107 - 1
AAAAAGCGAGCGAAAAAUGAAGAAAAUGUGGCGAUCAUCGUUGGCUCGUUUCA-GCGUUACAGCGU--------UUUAGCGCUAAGUUUUCAGCGUUUUUCGGUUUGCGUUUGCGU----
.....((((((((((((((..((((((.(((((.....(((((...(((....-)))...))))).--------.....))))).))))))..)))))))).))))))........---- ( -37.80)
>DroEre_CAF1 79842 117 - 1
A-AAACCGAGCGAAAAAUGAAGAAAAUGCGGCGAUCAUCGUUGGCUCGUUUCA-GCGUUUCAGCGUUUUAGCGUUUUAGCGCUAAGUUUUCAGCGUCUUU-GGCUUGAGUUUGCGUUUGC
.-(((((((((.(((.(((..(((((((..(((((((....))).))))..)(-(((((..(((((....)))))..))))))..))))))..))).)))-.))))).))))........ ( -36.30)
>DroYak_CAF1 64906 106 - 1
AAAAAGCGAGCGAAAAAUGAAGAAAAUGUGGCGAUCAUCGUUGGCUCGUUUCA-GCGUUACAGCGU--------UUUAGCGCUAAGUUUUCAGCGUUUUU-GGUUUGCGUUUGCGU----
.....((((((.(((((((..((((((.(((((.....(((((...(((....-)))...))))).--------.....))))).))))))..)))))))-.))))))........---- ( -37.80)
>consensus
AAAAACCGAGCGAAAAAUGAAGAAAAUGUGGCGAUCAUCGUUGGCUCGUUUCA_GCGUUACAGCGU________UUUAGCGCUAAGUUUUCAGCGUUUUU_GGUUUGCGUUUGCGU____
.....((((((((((((((..((((((.(((((.....(((((...(((.....)))...)))))..............))))).))))))..)))))))).))))))............ (-27.27 = -28.59 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:40 2006