Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,012,819 – 16,012,921 |
Length | 102 |
Max. P | 0.912101 |
Location | 16,012,819 – 16,012,921 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 84.41 |
Mean single sequence MFE | -23.23 |
Consensus MFE | -19.09 |
Energy contribution | -19.20 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.05 |
Mean z-score | -2.32 |
Structure conservation index | 0.82 |
SVM decision value | 1.08 |
SVM RNA-class probability | 0.912101 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16012819 102 + 22224390 UUCAUGCAUAAGUUAAUAUGCCUCGCUGGAAGUACGUAUGUAUGUAUGUACACCCCCU-UAUUCCCCUAUCCCUAUAAGUGGUGGGCUUAUGUUUAUGCGCCG .....(((((((...(((.(((.((((((..((((((((....))))))))..)).((-(((............))))).))))))).))).))))))).... ( -27.10) >DroSec_CAF1 80735 87 + 1 UUCAUGCAUAAGUUAAUAUGCCUCGCUGGAAAUACUUAUGUAUGUAUGUACACC--CUCUAUACCCCUAUCCCUAUAAGUAGUGGGCUC-------------- ..(((((((((((.......((.....))....)))))))))))..........--.......(((((((........)))).)))...-------------- ( -20.20) >DroSim_CAF1 74763 89 + 1 UUCAUGCAUAAGUUAAUAUGCCUCGCUGGAAAUACUUAUGUAUGGAUGUACACCCCCUCUAUACCCCUAUCCCUAUAAGUAGUGGGCUC-------------- (((((((((((((.......((.....))....))))))))))))).................(((((((........)))).)))...-------------- ( -22.40) >consensus UUCAUGCAUAAGUUAAUAUGCCUCGCUGGAAAUACUUAUGUAUGUAUGUACACCCCCUCUAUACCCCUAUCCCUAUAAGUAGUGGGCUC______________ ..(((((((((((.......((.....))....)))))))))))...................(((((((........)))).)))................. (-19.09 = -19.20 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:39 2006